thesnakeguy

How did you even managed to get the .collinearity output from MCScanX. I am using my .blast and .gff (chr gene start stop) as input, but I get 0 matches....

How did you even managed to get the .collinearity output from MCScanX. I am using my .blast and .gff (chr gene start stop) as input, but I get 0 matches....

Same for me, it's not working. I am using the right .gff input data (according to other users since there is conflicting info in the man pages here) -> chr...

Many thanks for your reply! I just got it running, the chromosome names of both species needed correct formatting in the gff and there were still some spaces instead of...

> Hello, I am having a very similar problem with the dapc command, where I get the same error as saidwali when I run the code > "mmOfour