Kyle Ferriter
Kyle Ferriter
I think the minimum necessary values are: - `length` - `repeatSubunitLength` https://github.com/ga4gh/vrs/blob/2.0.1/schema/vrs/json/ReferenceLengthExpression
Proposing `length` -> `VRS_Lengths` and `repeatSubunitLength` -> `VRS_RepeatSubunitLengths`. We may run into a situation where the ALT will be an RLE but the REF will not be. (or the inverse?)...
\# TODO https://github.com/ga4gh/vrs-python/blob/b9d9887975e327158d0095050c44f370f2919b77/src/ga4gh/vrs/normalize.py#L138-L140 Created https://github.com/ga4gh/vrs-python/issues/587
Docker Compose officially now recommends `compose` instead of `docker-compose`, and `.yaml` instead of `.yml`. https://docs.docker.com/compose/gettingstarted/#step-2-define-services-in-a-compose-file The compose specification is now more generic and community developed and supported by other engines,...
We have gained the ability to create new repositories in `ga4gh` in dockerhub.
hmmmm https://github.com/biocommons/seqrepo-rest-service/blob/main/src/seqrepo_rest_service/refget/refget-openapi.yaml
No beacon :( Beacon ~= gnomad? ```python class Syntax(str, Enum): """The syntax used to describe the variation. The value should be one of the supported syntaxes. """ HGVS_C = "hgvs.c"...
This issue is being closed as a wontimplement right now. Maybe beacon should be added as a syntax. The registration of input expressions that result in various VRS objects will...
@ehclark can you just remove the .wdl file from this PR and we can merge this one. We can revisit the wdl and workflow example files later in this https://github.com/ga4gh/vrs-python/issues/571
We could make a `--jsonl-out` work as the current `--ndjson-out` does, with records separated by a single `\n` char, and make a new `--ndjson-out` which separates records by a random...