Kyle Ferriter
Kyle Ferriter
With great frustration with multithreading in Python, I have found a way to work around this issue in client code at a higher level that doesn't add that much overhead....
I think it's okay to have a frequently used optional dependencies target. The core library functionality of the models and serialization stuff should be usable without those. Not being able...
@wlymanambry can you provide the code used in the method `SRQueryAsync.get_seq`?
It does print `Annotating with the VCF Annotator...' 😢
Oh wait `--silent` suppresses that
@jsstevenson I think having `--silent` suppress application logging/prints, but allowing the annotated VCF output to still be written to stdout makes sense. Since we'd want some way to slurp in...
The only other change I might make here is to remove that print of `Annotating with the VCF Annotator...` from the code entirely, or make it a DEBUG log. Or...
Actually might need SEQREPO_REST_URL in conftest.py to be separate. If someone wants to define a SEQREPO_DATAPROXY_URI to be a fielsystem directory, we still need some way to override this for...
I think the `hgvs_tools.py` `__main__` block was probably for testing during development. A shorter snippet could be moved into the class docstring. Thoughts on adding a CLI to vrs-python alongside...
`anyvrs-rest-service`