Tejus Shinde

icon company Medical University of Graz icon location Graz icon location Shell scripting, R, Python, DBMS-MySQL

Results 2 comments of Tejus Shinde

Question: Would it be possible to concatenate the braken read assignments from 2 different databases (1 bacterial database & 1 viral database)?

I managed to create a database with genomes from both of these databases. And I could successfully run Kraken2 on the files. But thank you for the discussion and thus...

est_abundance.py, ValueError: '1' is not in list

Would you happen to have a fix for this now? I get the same error on running Bracken with a custom-made Kraken2 database. I also could trace it back to...