thalassemia

BLD: Revamp BLAS/LAPACK G77 ABI wrappers and fix PROPACK segfaults

10

#### Reference issue Closes gh-15108. Includes all the changes in gh-18354. #### What does this implement/fix? Taking the lessons I learned from implementing Accelerate support, I rewrote the G77 BLAS/LAPACK...

feat(rust): Add RLE to `RLE_DICTIONARY` encoder

2

The `RLE_DICTIONARY` encoder currently only supports bit-packing. After this PR, the encoder will switch between bit-packing and RLE depending on whether a run is longer than 8 ([always bit-pack a...

feat(rust,python): Faster bitpacking for Parquet writer

1

I replaced the Parquet bit-packing algorithm with a modified version of the scalar algorithm from https://github.com/quickwit-oss/bitpacking (unsure where/how to give credit). I ensured the new algorithm works by adding unit...

We lack robust support for processes with more than one port to the same store. The multi-update workaround introduced in #28 allows ports that point to multiple leaf stores to...

## Bug report `executor.retry.reason` is mentioned in the [documentation](https://www.nextflow.io/docs/latest/config.html#scope-executor), but the code expects `executor.submit.retry.reason`. ### Expected behavior and actual behavior `executor.submit.retry.reason` is used in [this file](https://github.com/nextflow-io/nextflow/blob/0a8a484e082d0be4a41eec9c4ae9c298f9822f19/modules/nextflow/src/main/groovy/nextflow/executor/GridTaskHandler.groovy#L149). Since the `excutor` retry...