gggenomes
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thackl
A grammar of graphics for comparative genomics
Have you guys thought about submitting this nice work to the [Journal of Open Source Software](https://joss.theoj.org)? I am a topic editor there (see https://joss.theoj.org/about#editorial_board). Saw your package on LinkedIn [here](...
Hi, I love the library but I'm trying to add a second base data track and not sure if I'm doing something wrong or if this isn't supported. Basically I...
Dear @iimog @raynamharris @thackl @nschan @thomase4 Thanks again for a great package! I am using it for the first time so may be I am doing something wrong, but I...
Hi, gggenomes used to work for me, but now I get the following error. I've tried to re-install this using this dev package, but to no avail: devtools::install_github("thackl/gggenomes@fix-156",force =TRUE) g0...
Hi, Thanks for developing gggenomes! I came across a small bug when trying to plot "large" sequences with the package, where the labels on the bottom scale were wrong (eg.,...
`gggenomes(emale_genes, emale_seqs, emale_tirs, emale_ava) + geom_seq() + geom_bin_label() + # chromosomes and labels geom_feat(size=8) + # terminal inverted repeats geom_gene(aes(fill=strand), position="strand") + # genes geom_link(offset = 0.15) # synteny-blocks` >...
Got this via email I’m contacting you because I have been using the package you developed (gggenomes) to built synteny plots, and my question is whether its possible to use...
Hi, I am comparing circular sequences with random start points. It there a way that I can manually change the start points of the seq tracks without changing the mapping...
For newbies, who are not familiar with shell. Or not family with other blast tools or packages. If you want to generate pairwise blast links with online NCBI Blast (https://blast.ncbi.nlm.nih.gov/Blast.cgi),...
