Thomas Funck
Thomas Funck
Hi Will, Thanks for the message! I'm at a conference right now until Thursday and then off on vacation for a week. I'll try to have a look at it...
Hi Will, I did and just pushed the change last night. Can you run it again and let me know how it goes? Thomas On Fri, Jul 15, 2022, 05:12...
Hi, thank you very much for the bug report. I believe the issue should be fixed now. Please try again and let me know how it goes. Cheers Thomas
Thanks for the update. I'm pretty sure this code is fixed in the code but I didn't create a new singularity image. The interface for singularity hub has changed and...
Hi, Singularity-Hub has apparently become read only so I can't make any more updates to it. However, I fixed the bug in a Docker container : tffunck/appian:latest. You can download...
I think I know what's causing the problem. Is the PET image you are trying to process a 3D volume? I think it's crashing because the mincreshape command was expecting...
Ok great. I've made the fix and am testing it right now. I'll push the change shortly and let you know.
Okay, I pushed a new version to tffunck/appian:latest-dev. Let me know if this solves the problem for you and I'll close the issue. Essentially, the stage where it was crashing...
Sorry I made a silly mistake in my bug fix. I'm going to add a 3D image to my test data so that I can catch these mistakes myself. I'll...
Ok I pushed new changes to tffunck/appian:latest-dev (and tested it on some 3D PET images this time), so it should work. Please let me know how it goes! Thomas