Tessa Green

icon indicating a website link https://tessadgreen.github.io/ icon indicating an email [email protected]

icon company KiraGen Bio icon location Boston, MA icon location ML for transcriptomics and immunology, with a focus on perturbation biology

Results 4 issues of Tessa Green

Update DIALOGUE.plot.R

1 comment

If any of the MCPs are present in just a subset of cell types, pairs.plot returns an error. I added a line to DIALOGUE.plot.av that removes any columns that are...

Only a subset of scaled data available in .X

When I export to h5ad from h5Seurat and my Seurat object has scaled data (for all genes), normalized data, and counts, the AnnData object .X has a number of genes...

website out of date

1 comment

Website points to old versions of Zenodo, data information table, and paper (links bioRxiv and not Nature Methods)

Install fails on M1 macs

20 comment

**Describe the bug** Unable to install using pip on M1 mac (Tessa and @stefanpeidli) **To Reproduce** `mamba create -n pertpy_env python=3.9 conda activate pertpy_env pip install pertpy` `(pertpy_env) stefanpeidli@Stefans-MBP ~...

bug