terancehhwong

Regarding this parameter, I wonder if it just does not blast the prokaryotic sequences (meaning that the transcript ID and sequence is still in the transcriptome), or if it fully...

I see, thanks! Moreover, I also wanna ask if diamond blastp can be used to blast against other common databases, such as trinotate, KEGG etc just like NCBI blastp tool...

oh wait...when i tried to use diamond blast to blast against a previously downloaded uniprot database, it says Opening the database... Error: This executable was not compiled with support for...

I see. I also have a separate question: can we set the value for the length of the peptide when we perform blastp?Thanks

Oh I meant the alignment length. For example, for percent identity, u could set a certain threshold (with the parameter --id, eg --id 50) before performing blasting to only obtain...