Andrea Telatin
Andrea Telatin
Hello, I'm a fan of colored output, and I usually implement a way of switching it off. I think it would be very useful if the module itself could check...
Working on an old Linux (Ubuntu 16.04) server I realized I had nim 1.2.x installed, so I checked if `choosenim` was available. It was (couldn't check the version) so I...
When using the last tag (v0.16) or the cloned repo, I get this warning with Nim 1.6.6 ``` yaml/dom.nim(195, 3) Warning: Cannot prove that 'result' is initialized. This will become...
Hello Brent! I tried compiling a static binary with your docker solution, and it doesn't work from the AMD nodes in the cluster I use. (i.e. the help screen is...
Using pyfastx version 0.8.4, I tried iterating over records but the "comment" attribute is not reset. Is there a safer way to iterate (I would like not to assume FASTA...
Not sure if this is a real issue, so just reporting and in the case can be ignored :) I'm currently using `Version 1.2.6`: ```` {path}/.nimble/pkgs/docopt-0.6.8/docopt.nim(113, 1) Warning: observable stores...
**Description** I try to avoid like plague paths with spaces, but sometimes they slip through. **Steps to Reproduce** Steps to reproduce the behaviour: ``` bactopia datasets [...] Downloading "http://www.mgc.ac.cn/VFs/Down/VFDB_setA_nt.fas.gz" and...
I finally managed to receive emails via [email protected], and tried to link my MetaCPAN account (made with GitHub OAuth) to PAUSE. I received the e-mail but when clicking the activation...
To allow users with an NCBI Api Key to bypass the ``` [2022-07-14 20:02:11,572] ERROR 429 Client Error: Too Many Requests for url: https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=sra&id=SRR8907352&rettype=fasta&retmode=xml ``` error
### Description of feature Running: ``` nextflow run nf-core/fetchngs -r 1.7 --input list.txt --outdir sra -profile docker ``` Pipeline fails at `NFCORE_FETCHNGS:SRA:SRA_IDS_TO_RUNINFO`: ```text [ERROR] The server couldn't fulfill the request....