teepean
teepean
Snipsa scrapes snps from Yfull using function load_yfull_snp. https://github.com/alinja/snipsa/blob/main/haploy.py
Htslib uses libdeflate so maybe that would be a better option?
Just FYI that the addition of isal breaks Windows builds due to usage of sys/mman.h.
Hi! Ancient DNA uses mainly so called 1240k dataset as a reference "10379 unique individuals (6442 ancient, 3937 present-day)" but the dataset is in Eigenstrat format. Some studies seem to...
Thanks! Looks like it started processing but pops up an error message every now and then: Process Process-13: Traceback (most recent call last): File "/usr/lib/python3.10/multiprocessing/process.py", line 314, in _bootstrap self.run()...
You have to start by pressing Browse and then select the BAM, select the chromosomes and other options.
I am experiencing the same issue with Claude. I did test Gemini and it worked without problems. I did a test with openllm and it seems to work as well....
Looks like using GSA-24v1 fixed this problem.
Can confirm. The archive name is bowtie2-2.5.4-win-x86_64.zip but the compressed folder inside is named bowtie2-2.5.4-mingw-aarch64.
@chinwobble AdapterRemoval got a nice speed boost when SIMD instructions were introduced. It is a similar program to fastp so you might get the idea where the speed boost is...