teakostic

VCF file recommendations

1

Hi, We want to use CNVkit for CNV calling on somatic data. What kind of VCF file should we use for best results? Should it contain germline or somatic variants...

ValueError in coverage subcommand

9

Hi! We are getting the following error with CNVkit coverage subcommand: ``` """ Traceback (most recent call last): File "/usr/lib/python3.8/concurrent/futures/process.py", line 239, in _process_worker r = call_item.fn(*call_item.args, **call_item.kwargs) File "/usr/lib/python3.8/concurrent/futures/process.py",...