Tomás Di Domenico

feat: Add token auth to GitLab/GitHub hosting providers

5

### Description This PR adds an optional "token" argument to the `gitlab()` and `github()` code hosting provider. This allows for the usage of modules stored in private repositories. ### QC...

Making the parent-child relationship fieldname configurable

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Hello. Some GFF3 files use the "Derives_from" field instead of the "Parent" field to establish a parent-child relationship (see an example from miRBase: ftp://mirbase.org/pub/mirbase/CURRENT/genomes/ath.gff3). Would you consider a pull request...

Make the "parent" GFF field configurable

1

This is usefult for example in the case of miRBase GFF files, where "Derives_from" is used instead of "Parent". `gffutils.create_db` accepts a `transform` function which can be used to adjust...

Problem in the sort_vcf rule

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Hi Wouter. This may not necessarily be a problem with the pipeline, but maybe you can give me a hand with it. Most of the vcf files can be sorted...

Add recipe for SVision-pro long-read SV caller ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). ### General instructions * If this PR adds or...