Tiffany Delhomme

error when trying to push

4

Hi, Trying to push my commits I get the following: `fatal: could not read Username for 'https://github.com': Input/output error` No one ask me for my username and password... Any idea?

Statistic TumorSampleAltAlleleFraction is truncated

2

Dear all, This is not really an issue about the Strelka2 variant caller, but more a question about a particular statistic used in the algorithm: I simply run Strelka2 (somatic...

We should adapt our CircleCI tests to the new 2.0 version. Follow the [guidelines](https://circleci.com/sunset1-0/?mkt_tok=eyJpIjoiT0RZd09HSmpaV1ZqWXpZeSIsInQiOiJ0VGFIeEJKeEFrQU40aEdEWFwvM1NZd0dISkltS2htZ0lUdkU2XC93WGNXb0NnTk5xQmU4Z09uR2FadFBiVzIwYzZzaHoyTkkremFnTzRCMzdjRVpIWnJEclEyVXQwM3pcL2JnS3RZYWZFN3p5Zm55RVFFT1pHdTkxWVd4TndYbmc5QyJ9), and take example of their [webinars](https://www.youtube.com/watch?v=xOSHKNUIkjY). With 2.0, the CircleCi yaml file would not be `circle.yml`...

Add more description on the executed command, e.g. output also: * --map_qual and --base_qual thresholds * working directory path

correct insertion extraction from mpileup

1

At the moment, `samtools mpileup` gives an "=" at the end of some insertions, and we have opened an [issue](https://github.com/samtools/samtools/issues/842) for that. This results in such a line in the...

The 'required' field in CWL is not kept when convert app

2

Hi all, When I want to convert a CWL JSON file into an app, my 'required' field is not taken into account: The following is one of my input definition:...

Datasets API does not return the expected file number

5

When I ask for a limit of 10 files, (it is the same behaviour if I ask 1000 files), the api seems to don't take this into account: ``` >...