Tom Close

Support for invalid-Python-keyword labels in API

3

Label names in Docker can have '.'s in them (e.g. `org.nrg.commands` is a special label used in XNAT's container service) but the syntax of the API, i.e. `_Renderer.label(label_name=label_content)`, doesn't support...

I ran into a strange bug when trying to lock a file on a network file-system mounted inside a container, where the lock file was created but for some reason...

Link to files from line references in test log

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Not sure what would be involved in this but is there any way to add hyperlinks to file paths/line numbers referenced in the test log that open the files in...

Modified allowed values validator so it can accept lazy fields

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## Types of changes - Bug fix (non-breaking change which fixes an issue) ## Summary Disables checking on allowed values when lazy field is passed to the attribute

Specify input/output fields with dictionaries instead of tuple/dict hybrid

1

My 2 cents on a minor stylistic issue, but I feel like it might be more intuitive if fields in shell-command input/output specs were defined with dictionaries rather than tuples...

On the line https://github.com/nipype/pydra/blob/ac06f8cc691c62e3d56e9e94ef015a675c73851f/pydra/engine/helpers_file.py#L713, any string field containing '.' is treated as a path. This precludes passing a file extension as an input to be appended on the end of...

added nest_asyncio to install requires

4

## Acknowledgment - [x] I acknowledge that this contribution will be available under the Apache 2 license. ## Types of changes - [x] Bug fix (non-breaking change which fixes an...

Running workflow in pydra tutorial (on Binder) with "serial" plugin raises async error

5

* Pydra version: 0.16.2 * Run the Pydra tutorial with "serial" plugin * The workflow 1 would run successfully * It raised the following error ``` --------------------------------------------------------------------------- TypeError Traceback (most...

I'm just wondering why attrs validators are disabled in `pydra.__init__.py`. I am planning to use attrs validators in my own code, so if they didn't need to be disabled globally...

Comparisons between Pydra, Nipype v1 and CWL

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This discussion follows on from https://github.com/nipy/nipype/issues/3245#issuecomment-698512224. Thanks for the explanation @djarecka. I get the benefits of caching now. Looking at the [generated input/output interfaces](https://github.com/djarecka/pydra-fsl/tree/bet_tmp/preprocess), am I right in saying that...