Tavi Nathanson

Continues to be needed!

@jburos it currently looks for "mutect" or "strelka" in the filename to figure out how to parse the file. Silly, I know. We need to do better.

@jburos my understanding is that we can't rely on a standard format for things like depth and VAF, hence needing to understand the caller in order to grab them. But...

@jburos what do you mean by "that the cache may have been initialized with a partially-filtered set of variants"? Where does that happen?

@jburos gotcha, makes sense! Maybe we should put https://github.com/hammerlab/cohorts/blob/master/cohorts/cohort.py#L989 inside this function?

@jburos I think we can have both of those things. Caching on the `isovar` results is useful in terms of time savings, for sure; and this does it in a...

I think the single-`Cohort` use case is probably a lot more common, so I'd be actually fine with not fixing this any further.

I think that's fair game. `cohorts` seems to support several random use cases; e.g. it's even useful for both genetic data and purely clinical data. Eventually, instead of `None` in...

We currently use [hyper](https://github.com/tavinathanson/hyper)'s "Peek at Text Changes" to see what numbers have changed in a paper after any update. Would be great to have a related feature within/working with...

@jburos is this fixed now?