tanusaroha

Is clean.core.tree file generated by fastTree after running gubbin and snippy, a recombination free core SNP tree file?

1

After running snippy on multiple isolates, with command snippy-multi , i have run recombination detection tool as given: %run_gubbins.py -p gubbins clean.full.aln % snp-sites -c gubbins.filtered_polymorphic_sites.fasta > clean.core.aln % FastTree...