Cannot change style and font when using jcvi.graphics.synteny

[xieduo7]

Dear all,

I found no change in my output file after I used the --style and --font option:

$ python -m jcvi.graphics.synteny test2.block testn.bed blocks.layout --genelabelsize 6 --font=Arial --style=dark
21:30:04 [base] Load file `testn.bed`
21:30:04 [base] Load file `test2.block`
21:30:04 [base] Load file `blocks.layout`
Column 0: ENSG00000277322 - ENSG00000254585 (chr15:20534262-23647742)
  chr15 .. 20 (20) features .. +
Column 1: gene28021 - gene32698 (None:1972516-376270)
  None .. 10 (14) features .. -
21:30:05 [base] Figure saved to `test2.pdf` (2400px x 2100px)

The output:

How can I change the style, font, and the color of text?

---

The input: test2.block

ENSG00000277322	gene28021
ENSG00000230031	gene32698
ENSG00000278522	gene32698
ENSG00000182974	.
ENSG00000279408	.
ENSG00000280709	.
ENSG00000233917	gene32698
ENSG00000274102	.
ENSG00000183706	.
ENSG00000285472	.
ENSG00000277865	gene28021
ENSG00000170113	gene28165
ENSG00000140157	gene28166
ENSG00000273749	gene28167
ENSG00000275835	gene28168
ENSG00000273976	gene28021
ENSG00000261739	gene29342
ENSG00000174450	gene28155
ENSG00000179455	gene28154
ENSG00000254585	gene28153

The testn.bed

chr15	23128792	23136731	ENSG00000273976	0	-
chr15	21651934	21652882	ENSG00000279408	0	+
chr15	23643995	23647742	ENSG00000254585	0	-
chr15	23565782	23567303	ENSG00000179455	0	+
chr15	21408985	21440011	ENSG00000278522	0	-
chr15	22094521	22095469	ENSG00000183706	0	+
chr15	23439747	23447181	ENSG00000174450	0	-
chr15	22996908	23039543	ENSG00000275835	0	-
chr15	21846350	21877246	ENSG00000233917	0	-
chr15	22094521	22095469	ENSG00000285472	0	+
chr15	22459122	22466822	ENSG00000277865	0	+
chr15	20534261	20541709	ENSG00000277322	0	-
chr15	22851731	22866844	ENSG00000140157	0	+
chr15	21638006	21638945	ENSG00000182974	0	+
chr15	21651934	21652882	ENSG00000280709	0	+
chr15	22870030	22947285	ENSG00000273749	0	-
chr15	23354845	23365131	ENSG00000261739	0	+
chr15	22786656	22824236	ENSG00000170113	0	+
chr15	20835393	20866281	ENSG00000230031	0	-
chr15	22080624	22081563	ENSG00000274102	0	+
CM009253.2	1972515	1980189	gene28021	0	-
CM009253.2	6671841	6675618	gene28153	0	+
CM009253.2	6752303	6753824	gene28154	0	-
CM009253.2	6869358	6878278	gene28155	0	+
CM009253.2	7165907	7203907	gene28165	0	+
CM009253.2	7231470	7246602	gene28166	0	+
CM009253.2	7249782	7360321	gene28167	0	-
CM009253.2	7371768	7419175	gene28168	0	-
CM009253.2	80428847	80432170	gene29342	0	-
CM009256.2	345324	376270	gene32698	0	+

The layout:

# x,   y, rotation,   ha,     va,   color, ratio,            label
0.5, 0.6,        0, left, top,       m,     1,       Homo_sapiens chr15
0.2, 0.4,        0, left, bottom, #fc8d62,     .5, Pan_troglodytes CM009253.2,CM009256.2
# edges
e, 0, 1

[lifan18]

I have the same question waiting for a kindly help!

BTW, Merry Xmas Everybody!

[tanghaibao]

@xieduo7 @lifan18

Currently the styles and fonts are not easily customized in such plots.

Since the fonts are plotted via LaTeX, I need to check an alternative way to change the fonts, other than --font. Also --style does not work since it only affects figures with axes.