goatools

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Hi, I used the ENSG gene type to run the gene ontology method, but I found that it cannot work, and I received this error: **FATAL: NO POPULATION ITEMS SEEN...

HelloWorldLTY

Keeping terms not in DAG

2

Thank you for your great tool! I'm using EggNOG mapper to annotate my non-model organisms for subsequent enrichment analysis. The mapper outputs GOs for each gene and other terms in...

Prunoideae

Hi developers, Thanks for this useful tool. Please, I ask your help to understand a concept. I have some GO terms retrieved from InterProScan functional annotation and I want to...

juanjo255

Thank you for creating this very useful tool! Is there an option to not show L,D,R... next to the GO IDs in the plot when running go_plot.py?

LeilaFattel

Hi, Thank you for providing such a great tool! I encountered a "Unicode Decode Error: 'ascii' codec can't decode byte 0xe2 in position 1103: ordinal not in range(128)". I converted...

yb520abab

Hi, I'm using the function godag_plot.plot_gos to plot a DAG of chosen GO terms. It mostly works, but there's an extra, unconnected node, at the top of the graph saying...

avigailtaylor

I couldn't get "regulates" ancestors terms

7

Hello, I tried to get all ancestors terms following the "parents_and_ancestors.ipynb" notebook, but what I could get was only "is_a" ancestors terms. Here is the screenshot from my jupyter notebook....

10myl200