Bio-Pipeline

A collection of light bioinformatics analysis pipelines for specific tasks.

• Synonymous calculation
• Blast nearby (given anchors, BLAST around local regions, useful for finding CNS)
• Lastz wrapper (print BLAST-tabular output, also parallelize the calculation)
• BioMart connector for Python
• Performing statistical test for gap deletion models
• Print feature sequences given GFF file and FASTA file (e.g. extracting CDS sequences)

Dive into specific folder to view more detailed usage on each application.