tamuanand

Question: convertalis format-mode and custom column headers

1

Hi I have a question on outputting custom column headers. This [wiki page](https://github.com/soedinglab/mmseqs2/wiki#custom-alignment-format-with-convertalis) states: `Column headers can be added to the output with --format-mode 4` I am using MMseqs2 Version:...

I find that I run into segmentation fault issues when I am running hhblits and/or addss.pl when I use long sequences (19000 sequence length) and hence my question: Is there...

errors at PSIPRED step - Builiding customized databases for HHSuite

27

Hi I have an existing thread where my question was on obtaining the dsspcmbi binary : https://github.com/soedinglab/hh-suite/issues/72 I then downloaded HHsuite version 3.0.0 (15-03-2015) and I am trying to build...

Container request for bamdst

3

Container for bamdst Repository: https://github.com/shiquan/bamdst If it helps, [I have detailed here](https://github.com/BioContainers/containers/issues/455#issuecomment-1207280478) in a conversation with @osallou how I built a container for myself. Having this in bioconda/biocontainers would be...

Biocontainers - security related questions

4

Hi We are trying to adopt Biocontainers as much as possible for our workflows. In this regard, there are often questions/concerns about security if using Biocontainers. This is of particular...

correct way to use DESeq after salmon quantification

15

Hi @rob-p I have a question on the "right" way of tximport/DESeq2 after salmon quant. Why I ask "right way" - is because I am a bit confused with the...

Can salmon be made available for ARM based arch

3

Hi @rob-p A question: Can salmon be made available for ARM based arch? Context: [AWS has recently launched instances with ARM based processors](https://aws.amazon.com/ec2/instance-types/r6/#:~:text=Amazon%20EC2%20R6g%20instances%20are,real%20time%20big%20data%20analytics.) which claim to have better performance. I...

Bioconda recipe for somalier

1

Hi Thanks for the great tool. Is it possible to have this made available via Bioconda Thanks in advance

Hi I am using `nf-core/tools - version 2.1` to build my schema file. The schema file (and json) builds correctly. However, the default values entered on the web builder do...

Is it possible to show date of index building and version on splash page

5

Hi I have a suggestion: Using this page as an example, http://refgenomes.databio.org/v2/asset/rn6/salmon_sa_index/splash?tag=default is it possible to display the date of index building and the software version used? The **[_build log_](http://refgenomes.databio.org/v2/asset/rn6/salmon_sa_index/log?tag=default)**...