tamuanand

Thanks a lot Andrea

Hi Milot, I am responding to your message from Nov 2017. I would like to give you these files but when I run the command, the files exist on the...

Hi @rob-p Thanks for the thanksgiving release of salmon. We saw salmon 1.3.0 for July 4th, salmon 1.4.0 for Thanksgiving, hopefully we would see 1.5.0 for Christmas and 1.6.0 for...

Hi @rob-p Wishing you a very Happy New Year. I wanted to check if you would have a pre-compiled ARM binary on an AWS machine as suggested here: > We...

Thanks @rob-p and Thanks in advance @mikelove The original question pertained to using salmon with say ILMN RNA-Seq followed by DGE with DESeq2 @rob-p - I will also use this...

@mikelove - was this question with reference to salmon quant on QuantSeq data? > Just to check: do you have length bias in your data (are counts roughly proportional to...

Thanks @mikelove I believe tximeta can be used only for human/mouse? In my case, it is not human/mouse @rob-p and @mikelove - Based on my reading of the salmon documentation,...

@mikelove Using your code snippet, what's the subtle difference between using `DESeqDataSetFromTximport and DESeqDataSetFromMatrix` -- or is it that there is no difference ``` # DESeqDataSetFromTximport dds

Thanks @mikelove > we had some people using txi$counts alone and not using the countsFromAbundance argument Based on the above, I assume that **_doing something like this is wrong_** as...

> It seems this is unambiguous from the documentation, right? Is there any question left about what to do? > > I can’t think how to explain it in sentences...