sleap
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talmolab
A deep learning framework for multi-animal pose tracking.
ONLY AFTER #1894 is merged. I refactored the `max_tracking` feature introduced in #1447 and simplified the implementation. It may give different results as the goal is similar but implemented differently....
# Bug description **Hello, When running the sleap training remotely (nvidia v100 GPU or nvidia a10 GPU; linux redhat), ie:** >labels="labels.v001_large_rf_grayscale.pkg.slp" > config_json="baseline_large_rf.topdown.json" > sleap-train "$config_json" "$labels" **the training works...
# Bug description ``` SLEAP: 1.3.4 TensorFlow: 2.7.0 Numpy: 1.19.5 Python: 3.7.12 OS: Linux-5.15.0-122-generic-x86_64-with-debian-bookworm-sid GPUs: 1/1 available Device: /physical_device:GPU:0 Available: True Initalized: False Memory growth: None ``` I am training...
# Bug description Started inference at: 2024-10-10 11:50:57.966297 Args: { 'data_path': 'C:/Users/Mitesh Kalathiya/MITESH LABELS.slp', 'models': [ 'C:/Users/Mitesh Kalathiya\\models\\240830_165951.centroid.n=500\\initial_config.json', 'C:/Users/Mitesh Kalathiya\\models\\240830_170733.centered_instance.n=500\\initial_config.json' ], 'frames': '0,-91756', 'only_labeled_frames': False, 'only_suggested_frames': False, 'output': 'C:/Users/Mitesh Kalathiya\\predictions\\MITESH...
# Bug description Cannot detect GPU in the SLEAP environment with the command `python -c "import sleap; sleap.system_summary()"`. I have an error instead. ## Expected behaviour I would expect the...
I have run into the same issue with sleap-track as previously reported in [#1871](https://github.com/talmolab/sleap/issues/1871). When executing the sleap-track command in a script submitted to a SLURM scheduler, TensorFlow generates the...
# Bug description When I try to run the Kalman filter (Predict > run inference> flow, enable filter after 10 frames, connect single track breaks), I get an error in...
### Description In some of our now-older environments, we were getting this error while try to run training: ``` File "/Users/liezlmaree/micromamba/envs/sleap_py310/lib/python3.10/site-packages/albumentations/core/keypoints_utils.py", line 228, in convert_keypoint_to_albumentations keypoint = (int(x), int(y), angle_to_2pi_range(a),...
### Description This PR skips the attempted previous prerelease of 1.4.1a3 (that does no bumpy the python version). But, we were running into trouble with conflicting `h5py` packages on the...