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talmolab
Installation issue on Macbook M4
Bug description
Successful installation, followed by crash when trying to run sleap-label. Chat GPT says "The error is clear that both Qt5 and Qt6 are present in the same Conda environment, which causes crashes"
Expected behaviour
Successful sleap-label GUI
Actual behaviour
After installation with "conda create -y -n sleap -c conda-forge -c anaconda -c sleap sleap=1.4.1", followed by "conda activate sleap" and "sleap-label", I receive the following message:
"objc[8746]: Class QT_ROOT_LEVEL_POOL__THESE_OBJECTS_WILL_BE_RELEASED_WHEN_QAPP_GOES_OUT_OF_SCOPE is implemented in both /opt/miniconda3/envs/sleap/lib/libQt6Core.6.9.1.dylib (0x14a9456c8) and /opt/miniconda3/envs/sleap/lib/libQt5Core.5.15.15.dylib (0x175eed2f8). This may cause spurious casting failures and mysterious crashes. One of the duplicates must be removed or renamed. objc[8746]: Class KeyValueObserver is implemented in both /opt/miniconda3/envs/sleap/lib/libQt6Core.6.9.1.dylib (0x14a9456f0) and /opt/miniconda3/envs/sleap/lib/libQt5Core.5.15.15.dylib (0x175eed320). This may cause spurious casting failures and mysterious crashes. One of the duplicates must be removed or renamed. objc[8746]: Class RunLoopModeTracker is implemented in both /opt/miniconda3/envs/sleap/lib/libQt6Core.6.9.1.dylib (0x14a945790) and /opt/miniconda3/envs/sleap/lib/libQt5Core.5.15.15.dylib (0x175eed370). This may cause spurious casting failures and mysterious crashes. One of the duplicates must be removed or renamed. Saving config: /Users/hamilton.oh/.sleap/1.4.1/preferences.yaml zsh: segmentation fault sleap-label"
and python shuts down.
"conda list | grep qt" shows: libopencv 4.11.0 qt6_py39h9d66867_609 conda-forge opencv 4.11.0 qt6_py39hb1f062c_609 conda-forge py-opencv 4.11.0 qt6_py39h0eb5886_609 conda-forge qt-main 5.15.15 h67564f6_4 conda-forge qt6-main 6.9.1 h9cca212_1 conda-forge qtpy 2.4.3 pyhd8ed1ab_1 conda-forge
I've tried "conda remove qt-main", but that deletes pretty much the whole package including sleap-label
Your personal set up
Macbook M4 Pro.
- OS: MacOS 15.5
- Version(s): SLEAP v1.4.1, python Python 3.9.23
- SLEAP installation method (listed here):
- [ ] Conda from package
- [ ] Conda from source
- [ ] pip package
- [x] Apple Silicon Macs. Installed with "conda create -y -n sleap -c conda-forge -c anaconda -c sleap sleap=1.4.1"
Environment packages
(sleap) hamilton.oh@MLSJ7RC6YM9NP ~ % conda list
# packages in environment at /opt/miniconda3/envs/sleap:
#
# Name Version Build Channel
absl-py 2.1.0 pypi_0 pypi
albumentations 1.3.1 pyhd8ed1ab_0 conda-forge
aom 3.9.1 h7bae524_0 conda-forge
astunparse 1.6.3 pypi_0 pypi
attrs 25.3.0 pyh71513ae_0 conda-forge
blosc 1.21.6 h7dd00d9_1 conda-forge
brotli 1.1.0 h5505292_3 conda-forge
brotli-bin 1.1.0 h5505292_3 conda-forge
brunsli 0.1 h9f76cd9_0 conda-forge
bzip2 1.0.8 h99b78c6_7 conda-forge
c-ares 1.34.5 h5505292_0 conda-forge
c-blosc2 2.17.1 h9cbb436_0 conda-forge
ca-certificates 2025.6.15 hbd8a1cb_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cachetools 5.5.0 pypi_0 pypi
cairo 1.18.4 h6a3b0d2_0 conda-forge
cattrs 1.1.1 pyhd8ed1ab_0 conda-forge
certifi 2025.6.15 pyhd8ed1ab_0 conda-forge
charls 2.4.2 h13dd4ca_0 conda-forge
charset-normalizer 3.4.0 pypi_0 pypi
contourpy 1.2.1 py39h48c5dd5_0 conda-forge
cycler 0.12.1 pyhd8ed1ab_1 conda-forge
cyrus-sasl 2.1.28 ha1cbb27_0 conda-forge
dav1d 1.2.1 hb547adb_0 conda-forge
dbus 1.16.2 hda038a8_0 conda-forge
double-conversion 3.3.1 h286801f_0 conda-forge
efficientnet 1.0.0 pypi_0 pypi
ffmpeg 7.1.1 gpl_h20db955_106 conda-forge
flatbuffers 1.12 pypi_0 pypi
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 h77eed37_3 conda-forge
fontconfig 2.15.0 h1383a14_1 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.58.4 py39hefdd603_0 conda-forge
freetype 2.13.3 hce30654_1 conda-forge
fribidi 1.0.10 h27ca646_0 conda-forge
gast 0.4.0 pypi_0 pypi
gdk-pixbuf 2.42.12 h7ddc832_0 conda-forge
giflib 5.2.2 h93a5062_0 conda-forge
glib 2.84.2 h85e5b2e_0 conda-forge
glib-tools 2.84.2 h1dc7a0c_0 conda-forge
gmp 6.3.0 h7bae524_2 conda-forge
google-auth 2.37.0 pypi_0 pypi
google-auth-oauthlib 0.4.6 pypi_0 pypi
google-pasta 0.2.0 pypi_0 pypi
graphite2 1.3.14 h286801f_0 conda-forge
grpcio 1.68.1 pypi_0 pypi
gst-plugins-base 1.24.11 h3c5c1d0_0 conda-forge
gstreamer 1.24.11 hfe24232_0 conda-forge
h5py 3.14.0 nompi_py39h1bcc307_100 conda-forge
harfbuzz 11.2.1 hab40de2_0 conda-forge
hdf5 1.14.6 nompi_ha698983_101 conda-forge
hdmf 3.14.6 pyhd8ed1ab_0 conda-forge
icu 75.1 hfee45f7_0 conda-forge
idna 3.10 pypi_0 pypi
image-classifiers 1.0.0 pypi_0 pypi
imagecodecs 2024.12.30 py39hcae9eef_1 conda-forge
imageio 2.37.0 pyhfb79c49_0 conda-forge
imageio-ffmpeg 0.6.0 pyhd8ed1ab_0 conda-forge
imath 3.1.12 h025cafa_0 conda-forge
imgstore 0.2.9 pypi_0 pypi
importlib-metadata 8.7.0 pyhe01879c_1 conda-forge
importlib-resources 6.5.2 pyhd8ed1ab_0 conda-forge
importlib_resources 6.5.2 pyhd8ed1ab_0 conda-forge
jasper 4.2.5 h743e416_0 conda-forge
joblib 1.5.1 pyhd8ed1ab_0 conda-forge
jsmin 3.0.1 pyhd8ed1ab_1 conda-forge
jsonpickle 1.2 py_0 conda-forge
jsonschema 4.24.0 pyhd8ed1ab_0 conda-forge
jsonschema-specifications 2025.4.1 pyh29332c3_0 conda-forge
jxrlib 1.1 h93a5062_3 conda-forge
keras 2.9.0 pyhd8ed1ab_0 conda-forge
keras-applications 1.0.8 pypi_0 pypi
keras-preprocessing 1.1.2 pypi_0 pypi
kiwisolver 1.4.7 py39h157d57c_0 conda-forge
krb5 1.21.3 h237132a_0 conda-forge
lame 3.100 h1a8c8d9_1003 conda-forge
lazy-loader 0.4 pyhd8ed1ab_2 conda-forge
lazy_loader 0.4 pyhd8ed1ab_2 conda-forge
lcms2 2.17 h7eeda09_0 conda-forge
lerc 4.0.0 hd64df32_1 conda-forge
libabseil 20250127.1 cxx17_h07bc746_0 conda-forge
libaec 1.1.4 h51d1e36_0 conda-forge
libasprintf 0.24.1 h493aca8_0 conda-forge
libass 0.17.3 h68e5b86_2 conda-forge
libavif16 1.3.0 hf1e31eb_0 conda-forge
libblas 3.9.0 20_osxarm64_openblas conda-forge
libbrotlicommon 1.1.0 h5505292_3 conda-forge
libbrotlidec 1.1.0 h5505292_3 conda-forge
libbrotlienc 1.1.0 h5505292_3 conda-forge
libcblas 3.9.0 20_osxarm64_openblas conda-forge
libclang 18.1.1 pypi_0 pypi
libclang-cpp17 17.0.6 default_hf90f093_8 conda-forge
libclang-cpp18.1 18.1.8 default_hf90f093_10 conda-forge
libclang13 20.1.7 default_hee4fbb3_0 conda-forge
libcurl 8.14.1 h73640d1_0 conda-forge
libcxx 20.1.7 ha82da77_0 conda-forge
libdeflate 1.24 h5773f1b_0 conda-forge
libedit 3.1.20250104 pl5321hafb1f1b_0 conda-forge
libev 4.33 h93a5062_2 conda-forge
libexpat 2.7.0 h286801f_0 conda-forge
libffi 3.4.6 h1da3d7d_1 conda-forge
libfreetype 2.13.3 hce30654_1 conda-forge
libfreetype6 2.13.3 h1d14073_1 conda-forge
libgettextpo 0.24.1 h493aca8_0 conda-forge
libgfortran 5.0.0 14_2_0_h6c33f7e_103 conda-forge
libgfortran5 14.2.0 h6c33f7e_103 conda-forge
libglib 2.84.2 hbec27ea_0 conda-forge
libhwloc 2.11.2 default_hbce5d74_1001 conda-forge
libhwy 1.2.0 h9a9ea7e_0 conda-forge
libiconv 1.18 hfe07756_1 conda-forge
libintl 0.24.1 h493aca8_0 conda-forge
libintl-devel 0.24.1 h493aca8_0 conda-forge
libjpeg-turbo 3.1.0 h5505292_0 conda-forge
libjxl 0.11.1 h72d67bc_2 conda-forge
liblapack 3.9.0 20_osxarm64_openblas conda-forge
liblapacke 3.9.0 20_osxarm64_openblas conda-forge
libllvm17 17.0.6 hc4b4ae8_3 conda-forge
libllvm18 18.1.8 hc4b4ae8_3 conda-forge
libllvm20 20.1.7 h598bca7_0 conda-forge
liblzma 5.8.1 h39f12f2_2 conda-forge
libnghttp2 1.64.0 h6d7220d_0 conda-forge
libntlm 1.8 h5505292_0 conda-forge
libogg 1.3.5 h48c0fde_1 conda-forge
libopenblas 0.3.25 openmp_h6c19121_0 conda-forge
libopencv 4.11.0 qt6_py39h9d66867_609 conda-forge
libopenvino 2025.0.0 h3f17238_3 conda-forge
libopenvino-arm-cpu-plugin 2025.0.0 h3f17238_3 conda-forge
libopenvino-auto-batch-plugin 2025.0.0 h7f72211_3 conda-forge
libopenvino-auto-plugin 2025.0.0 h7f72211_3 conda-forge
libopenvino-hetero-plugin 2025.0.0 h718ad69_3 conda-forge
libopenvino-ir-frontend 2025.0.0 h718ad69_3 conda-forge
libopenvino-onnx-frontend 2025.0.0 h1ae5b81_3 conda-forge
libopenvino-paddle-frontend 2025.0.0 h1ae5b81_3 conda-forge
libopenvino-pytorch-frontend 2025.0.0 h286801f_3 conda-forge
libopenvino-tensorflow-frontend 2025.0.0 heb6e3e1_3 conda-forge
libopenvino-tensorflow-lite-frontend 2025.0.0 h286801f_3 conda-forge
libopus 1.5.2 h48c0fde_0 conda-forge
libpng 1.6.49 h3783ad8_0 conda-forge
libpq 17.5 h6896619_0 conda-forge
libprotobuf 5.29.3 hccd9074_1 conda-forge
librsvg 2.58.4 h266df6f_3 conda-forge
libsodium 1.0.20 h99b78c6_0 conda-forge
libsqlite 3.50.1 h6fb428d_7 conda-forge
libssh2 1.11.1 h1590b86_0 conda-forge
libtiff 4.7.0 h2f21f7c_5 conda-forge
libusb 1.0.29 hbc156a2_0 conda-forge
libvorbis 1.3.7 h9f76cd9_0 conda-forge
libvpx 1.14.1 h7bae524_0 conda-forge
libwebp-base 1.5.0 h2471fea_0 conda-forge
libxcb 1.17.0 hdb1d25a_0 conda-forge
libxml2 2.13.8 h52572c6_0 conda-forge
libxslt 1.1.39 h223e5b9_0 conda-forge
libzlib 1.3.1 h8359307_2 conda-forge
libzopfli 1.0.3 h9f76cd9_0 conda-forge
llvm-openmp 20.1.7 hdb05f8b_0 conda-forge
lz4-c 1.10.0 h286801f_1 conda-forge
markdown 3.7 pypi_0 pypi
markdown-it-py 3.0.0 pyhd8ed1ab_1 conda-forge
markupsafe 3.0.2 pypi_0 pypi
matplotlib-base 3.8.4 py39h15359f4_2 conda-forge
mdurl 0.1.2 pyhd8ed1ab_1 conda-forge
munkres 1.1.4 pyhd8ed1ab_1 conda-forge
ncurses 6.5 h5e97a16_3 conda-forge
ndx-pose 0.1.1 pyhd8ed1ab_0 conda-forge
networkx 3.2.1 pyhd8ed1ab_0 conda-forge
nixio 1.5.4 pypi_0 pypi
nspr 4.36 h5833ebf_0 conda-forge
nss 3.113 ha3c76ea_0 conda-forge
numpy 1.24.4 pypi_0 pypi
oauthlib 3.2.2 pypi_0 pypi
opencv 4.11.0 qt6_py39hb1f062c_609 conda-forge
openexr 3.3.4 h37c74dd_0 conda-forge
openh264 2.6.0 hb5b2745_0 conda-forge
openjpeg 2.5.3 h8a3d83b_0 conda-forge
openldap 2.6.10 hbe55e7a_0 conda-forge
openssl 3.5.0 h81ee809_1 conda-forge
opt-einsum 3.4.0 pypi_0 pypi
packaging 25.0 pyh29332c3_1 conda-forge
pandas 2.2.3 py39hc5ad87a_1 conda-forge
pango 1.56.3 h5fd7515_1 conda-forge
patsy 1.0.1 pyhd8ed1ab_1 conda-forge
pcre2 10.45 ha881caa_0 conda-forge
pillow 11.2.1 py39hfea3036_0 conda-forge
pip 25.1.1 pyh8b19718_0 conda-forge
pixman 0.46.2 h2f9eb0b_0 conda-forge
pkgutil-resolve-name 1.3.10 pyhd8ed1ab_2 conda-forge
protobuf 3.19.6 pypi_0 pypi
psutil 7.0.0 py39hf3bc14e_0 conda-forge
pthread-stubs 0.4 hd74edd7_1002 conda-forge
pugixml 1.15 hd3d436d_0 conda-forge
py-opencv 4.11.0 qt6_py39h0eb5886_609 conda-forge
pyasn1 0.6.1 pypi_0 pypi
pyasn1-modules 0.4.1 pypi_0 pypi
pygments 2.19.2 pyhd8ed1ab_0 conda-forge
pykalman 0.9.7 pyhd8ed1ab_1 conda-forge
pynwb 2.8.3 pyhd8ed1ab_1 conda-forge
pyparsing 3.2.3 pyhd8ed1ab_1 conda-forge
pyside2 5.15.15 py39heabe5ed_0 conda-forge
python 3.9.23 h7139b31_0_cpython conda-forge
python-dateutil 2.9.0.post0 pyhe01879c_2 conda-forge
python-rapidjson 1.20 py39h941272d_1 conda-forge
python-tzdata 2025.2 pyhd8ed1ab_0 conda-forge
python_abi 3.9 7_cp39 conda-forge
pytz 2024.1 pyhd8ed1ab_0 conda-forge
pywavelets 1.6.0 py39h161d348_0 conda-forge
pyyaml 6.0.2 py39hefdd603_2 conda-forge
pyzmq 27.0.0 py39h80d5f2a_0 conda-forge
qimage2ndarray 1.10.0 pypi_0 pypi
qt-main 5.15.15 h67564f6_4 conda-forge
qt6-main 6.9.1 h9cca212_1 conda-forge
qtpy 2.4.3 pyhd8ed1ab_1 conda-forge
qudida 0.0.4 pyhd8ed1ab_0 conda-forge
rav1e 0.7.1 h0716509_3 conda-forge
readline 8.2 h1d1bf99_2 conda-forge
referencing 0.36.2 pyh29332c3_0 conda-forge
requests 2.32.3 pypi_0 pypi
requests-oauthlib 2.0.0 pypi_0 pypi
rich 14.0.0 pyh29332c3_0 conda-forge
rpds-py 0.25.1 py39h51e8d5a_0 conda-forge
ruamel.yaml 0.18.14 py39hf3bc14e_0 conda-forge
ruamel.yaml.clib 0.2.8 py39h57695bc_1 conda-forge
scikit-image 0.24.0 py39h998126f_1 conda-forge
scikit-learn 1.0 py39h12ba089_1 conda-forge
scikit-video 1.1.11 pyhecae5ae_1 conda-forge
scipy 1.9.0 py39h14896cb_0 conda-forge
sdl2 2.32.54 ha1acc90_0 conda-forge
sdl3 3.2.16 h92d3ae7_0 conda-forge
seaborn 0.13.2 hd8ed1ab_3 conda-forge
seaborn-base 0.13.2 pyhd8ed1ab_3 conda-forge
segmentation-models 1.0.1 pypi_0 pypi
setuptools 80.9.0 pyhff2d567_0 conda-forge
six 1.15.0 pypi_0 pypi
sleap 1.4.1 pypi_0 pypi
snappy 1.2.1 h98b9ce2_1 conda-forge
statsmodels 0.14.4 py39h914ef23_0 conda-forge
svt-av1 3.0.2 h8ab69cd_0 conda-forge
tbb 2022.1.0 h9541205_0 conda-forge
tensorboard 2.9.1 pypi_0 pypi
tensorboard-data-server 0.6.1 pypi_0 pypi
tensorboard-plugin-wit 1.8.1 pypi_0 pypi
tensorflow-estimator 2.9.0 pypi_0 pypi
tensorflow-hub 0.12.0 pypi_0 pypi
tensorflow-macos 2.9.2 pypi_0 pypi
tensorflow-metal 0.5.0 pypi_0 pypi
termcolor 2.5.0 pypi_0 pypi
threadpoolctl 3.6.0 pyhecae5ae_0 conda-forge
tifffile 2024.6.18 pyhd8ed1ab_0 conda-forge
tk 8.6.13 h892fb3f_2 conda-forge
typing-extensions 4.14.0 h32cad80_0 conda-forge
typing_extensions 4.14.0 pyhe01879c_0 conda-forge
tzdata 2025b h78e105d_0 conda-forge
tzlocal 5.2 pypi_0 pypi
unicodedata2 16.0.0 py39hf3bc14e_0 conda-forge
urllib3 2.2.3 pypi_0 pypi
werkzeug 3.1.3 pypi_0 pypi
wheel 0.45.1 pyhd8ed1ab_1 conda-forge
wrapt 1.17.0 pypi_0 pypi
x264 1!164.3095 h57fd34a_2 conda-forge
x265 3.5 hbc6ce65_3 conda-forge
xorg-libxau 1.0.12 h5505292_0 conda-forge
xorg-libxdmcp 1.1.5 hd74edd7_0 conda-forge
yaml 0.2.5 h3422bc3_2 conda-forge
zeromq 4.3.5 hc1bb282_7 conda-forge
zfp 1.0.1 h1c5d8ea_2 conda-forge
zipp 3.23.0 pyhd8ed1ab_0 conda-forge
zlib-ng 2.2.4 h13dfb9a_0 conda-forge
zstd 1.5.7 h6491c7d_2 conda-forge
Logs
objc[8921]: Class QT_ROOT_LEVEL_POOL__THESE_OBJECTS_WILL_BE_RELEASED_WHEN_QAPP_GOES_OUT_OF_SCOPE is implemented in both /opt/miniconda3/envs/sleap/lib/libQt6Core.6.9.1.dylib (0x15930d6c8) and /opt/miniconda3/envs/sleap/lib/libQt5Core.5.15.15.dylib (0x169afd2f8). This may cause spurious casting failures and mysterious crashes. One of the duplicates must be removed or renamed.
objc[8921]: Class KeyValueObserver is implemented in both /opt/miniconda3/envs/sleap/lib/libQt6Core.6.9.1.dylib (0x15930d6f0) and /opt/miniconda3/envs/sleap/lib/libQt5Core.5.15.15.dylib (0x169afd320). This may cause spurious casting failures and mysterious crashes. One of the duplicates must be removed or renamed.
objc[8921]: Class RunLoopModeTracker is implemented in both /opt/miniconda3/envs/sleap/lib/libQt6Core.6.9.1.dylib (0x15930d790) and /opt/miniconda3/envs/sleap/lib/libQt5Core.5.15.15.dylib (0x169afd370). This may cause spurious casting failures and mysterious crashes. One of the duplicates must be removed or renamed.
==========SYSTEM==========
utc: 2025-06-28 18:21:20.718994
python: 3.9.23
system: Darwin, arm64, 24.5.0, Darwin Kernel Version 24.5.0: Tue Apr 22 19:53:27 PDT 2025; root:xnu-11417.121.6~2/RELEASE_ARM64_T6041
path: /Users/hamilton.oh/local/bin:/Users/hamilton.oh/local/scripts:/opt/miniconda3/envs/sleap/bin:/opt/miniconda3/condabin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Applications/iTerm.app/Contents/Resources/utilities
==========IMPORTS==========
sleap import: True
sleap path: /opt/miniconda3/envs/sleap/lib/python3.9/site-packages/sleap/__init__.py
sleap version: 1.4.1
pyside2 import: True
pyside path: /opt/miniconda3/envs/sleap/lib/python3.9/site-packages/PySide2/__init__.py
objc[8923]: Class QT_ROOT_LEVEL_POOL__THESE_OBJECTS_WILL_BE_RELEASED_WHEN_QAPP_GOES_OUT_OF_SCOPE is implemented in both /opt/miniconda3/envs/sleap/lib/libQt6Core.6.9.1.dylib (0x1309556c8) and /opt/miniconda3/envs/sleap/lib/libQt5Core.5.15.15.dylib (0x154a612f8). This may cause spurious casting failures and mysterious crashes. One of the duplicates must be removed or renamed.
objc[8923]: Class KeyValueObserver is implemented in both /opt/miniconda3/envs/sleap/lib/libQt6Core.6.9.1.dylib (0x1309556f0) and /opt/miniconda3/envs/sleap/lib/libQt5Core.5.15.15.dylib (0x154a61320). This may cause spurious casting failures and mysterious crashes. One of the duplicates must be removed or renamed.
objc[8923]: Class RunLoopModeTracker is implemented in both /opt/miniconda3/envs/sleap/lib/libQt6Core.6.9.1.dylib (0x130955790) and /opt/miniconda3/envs/sleap/lib/libQt5Core.5.15.15.dylib (0x154a61370). This may cause spurious casting failures and mysterious crashes. One of the duplicates must be removed or renamed.
successfully created PySide2.QtWidgets.QApplication instance
pyside6 import: False
cv2 import: True
==========GIT==========
call to git failed
fatal: not a git repository (or any of the parent directories): .git
call to git failed
fatal: not a git repository (or any of the parent directories): .git
==========TENSORFLOW==========
tensorflow import: True
tensorflow version: 2.9.2
tensorflow path: /opt/miniconda3/envs/sleap/lib/python3.9/site-packages/tensorflow/__init__.py
gpus: [PhysicalDevice(name='/physical_device:GPU:0', device_type='GPU')]
==========CONDA==========
# packages in environment at /opt/miniconda3/envs/sleap:
#
# Name Version Build Channel
absl-py 2.1.0 pypi_0 pypi
albumentations 1.3.1 pyhd8ed1ab_0 conda-forge
aom 3.9.1 h7bae524_0 conda-forge
astunparse 1.6.3 pypi_0 pypi
attrs 25.3.0 pyh71513ae_0 conda-forge
blosc 1.21.6 h7dd00d9_1 conda-forge
brotli 1.1.0 h5505292_3 conda-forge
brotli-bin 1.1.0 h5505292_3 conda-forge
brunsli 0.1 h9f76cd9_0 conda-forge
bzip2 1.0.8 h99b78c6_7 conda-forge
c-ares 1.34.5 h5505292_0 conda-forge
c-blosc2 2.17.1 h9cbb436_0 conda-forge
ca-certificates 2025.6.15 hbd8a1cb_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cachetools 5.5.0 pypi_0 pypi
cairo 1.18.4 h6a3b0d2_0 conda-forge
cattrs 1.1.1 pyhd8ed1ab_0 conda-forge
certifi 2025.6.15 pyhd8ed1ab_0 conda-forge
charls 2.4.2 h13dd4ca_0 conda-forge
charset-normalizer 3.4.0 pypi_0 pypi
contourpy 1.2.1 py39h48c5dd5_0 conda-forge
cycler 0.12.1 pyhd8ed1ab_1 conda-forge
cyrus-sasl 2.1.28 ha1cbb27_0 conda-forge
dav1d 1.2.1 hb547adb_0 conda-forge
dbus 1.16.2 hda038a8_0 conda-forge
double-conversion 3.3.1 h286801f_0 conda-forge
efficientnet 1.0.0 pypi_0 pypi
ffmpeg 7.1.1 gpl_h20db955_106 conda-forge
flatbuffers 1.12 pypi_0 pypi
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 h77eed37_3 conda-forge
fontconfig 2.15.0 h1383a14_1 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.58.4 py39hefdd603_0 conda-forge
freetype 2.13.3 hce30654_1 conda-forge
fribidi 1.0.10 h27ca646_0 conda-forge
gast 0.4.0 pypi_0 pypi
gdk-pixbuf 2.42.12 h7ddc832_0 conda-forge
giflib 5.2.2 h93a5062_0 conda-forge
glib 2.84.2 h85e5b2e_0 conda-forge
glib-tools 2.84.2 h1dc7a0c_0 conda-forge
gmp 6.3.0 h7bae524_2 conda-forge
google-auth 2.37.0 pypi_0 pypi
google-auth-oauthlib 0.4.6 pypi_0 pypi
google-pasta 0.2.0 pypi_0 pypi
graphite2 1.3.14 h286801f_0 conda-forge
grpcio 1.68.1 pypi_0 pypi
gst-plugins-base 1.24.11 h3c5c1d0_0 conda-forge
gstreamer 1.24.11 hfe24232_0 conda-forge
h5py 3.14.0 nompi_py39h1bcc307_100 conda-forge
harfbuzz 11.2.1 hab40de2_0 conda-forge
hdf5 1.14.6 nompi_ha698983_101 conda-forge
hdmf 3.14.6 pyhd8ed1ab_0 conda-forge
icu 75.1 hfee45f7_0 conda-forge
idna 3.10 pypi_0 pypi
image-classifiers 1.0.0 pypi_0 pypi
imagecodecs 2024.12.30 py39hcae9eef_1 conda-forge
imageio 2.37.0 pyhfb79c49_0 conda-forge
imageio-ffmpeg 0.6.0 pyhd8ed1ab_0 conda-forge
imath 3.1.12 h025cafa_0 conda-forge
imgstore 0.2.9 pypi_0 pypi
importlib-metadata 8.7.0 pyhe01879c_1 conda-forge
importlib-resources 6.5.2 pyhd8ed1ab_0 conda-forge
importlib_resources 6.5.2 pyhd8ed1ab_0 conda-forge
jasper 4.2.5 h743e416_0 conda-forge
joblib 1.5.1 pyhd8ed1ab_0 conda-forge
jsmin 3.0.1 pyhd8ed1ab_1 conda-forge
jsonpickle 1.2 py_0 conda-forge
jsonschema 4.24.0 pyhd8ed1ab_0 conda-forge
jsonschema-specifications 2025.4.1 pyh29332c3_0 conda-forge
jxrlib 1.1 h93a5062_3 conda-forge
keras 2.9.0 pyhd8ed1ab_0 conda-forge
keras-applications 1.0.8 pypi_0 pypi
keras-preprocessing 1.1.2 pypi_0 pypi
kiwisolver 1.4.7 py39h157d57c_0 conda-forge
krb5 1.21.3 h237132a_0 conda-forge
lame 3.100 h1a8c8d9_1003 conda-forge
lazy-loader 0.4 pyhd8ed1ab_2 conda-forge
lazy_loader 0.4 pyhd8ed1ab_2 conda-forge
lcms2 2.17 h7eeda09_0 conda-forge
lerc 4.0.0 hd64df32_1 conda-forge
libabseil 20250127.1 cxx17_h07bc746_0 conda-forge
libaec 1.1.4 h51d1e36_0 conda-forge
libasprintf 0.24.1 h493aca8_0 conda-forge
libass 0.17.3 h68e5b86_2 conda-forge
libavif16 1.3.0 hf1e31eb_0 conda-forge
libblas 3.9.0 20_osxarm64_openblas conda-forge
libbrotlicommon 1.1.0 h5505292_3 conda-forge
libbrotlidec 1.1.0 h5505292_3 conda-forge
libbrotlienc 1.1.0 h5505292_3 conda-forge
libcblas 3.9.0 20_osxarm64_openblas conda-forge
libclang 18.1.1 pypi_0 pypi
libclang-cpp17 17.0.6 default_hf90f093_8 conda-forge
libclang-cpp18.1 18.1.8 default_hf90f093_10 conda-forge
libclang13 20.1.7 default_hee4fbb3_0 conda-forge
libcurl 8.14.1 h73640d1_0 conda-forge
libcxx 20.1.7 ha82da77_0 conda-forge
libdeflate 1.24 h5773f1b_0 conda-forge
libedit 3.1.20250104 pl5321hafb1f1b_0 conda-forge
libev 4.33 h93a5062_2 conda-forge
libexpat 2.7.0 h286801f_0 conda-forge
libffi 3.4.6 h1da3d7d_1 conda-forge
libfreetype 2.13.3 hce30654_1 conda-forge
libfreetype6 2.13.3 h1d14073_1 conda-forge
libgettextpo 0.24.1 h493aca8_0 conda-forge
libgfortran 5.0.0 14_2_0_h6c33f7e_103 conda-forge
libgfortran5 14.2.0 h6c33f7e_103 conda-forge
libglib 2.84.2 hbec27ea_0 conda-forge
libhwloc 2.11.2 default_hbce5d74_1001 conda-forge
libhwy 1.2.0 h9a9ea7e_0 conda-forge
libiconv 1.18 hfe07756_1 conda-forge
libintl 0.24.1 h493aca8_0 conda-forge
libintl-devel 0.24.1 h493aca8_0 conda-forge
libjpeg-turbo 3.1.0 h5505292_0 conda-forge
libjxl 0.11.1 h72d67bc_2 conda-forge
liblapack 3.9.0 20_osxarm64_openblas conda-forge
liblapacke 3.9.0 20_osxarm64_openblas conda-forge
libllvm17 17.0.6 hc4b4ae8_3 conda-forge
libllvm18 18.1.8 hc4b4ae8_3 conda-forge
libllvm20 20.1.7 h598bca7_0 conda-forge
liblzma 5.8.1 h39f12f2_2 conda-forge
libnghttp2 1.64.0 h6d7220d_0 conda-forge
libntlm 1.8 h5505292_0 conda-forge
libogg 1.3.5 h48c0fde_1 conda-forge
libopenblas 0.3.25 openmp_h6c19121_0 conda-forge
libopencv 4.11.0 qt6_py39h9d66867_609 conda-forge
libopenvino 2025.0.0 h3f17238_3 conda-forge
libopenvino-arm-cpu-plugin 2025.0.0 h3f17238_3 conda-forge
libopenvino-auto-batch-plugin 2025.0.0 h7f72211_3 conda-forge
libopenvino-auto-plugin 2025.0.0 h7f72211_3 conda-forge
libopenvino-hetero-plugin 2025.0.0 h718ad69_3 conda-forge
libopenvino-ir-frontend 2025.0.0 h718ad69_3 conda-forge
libopenvino-onnx-frontend 2025.0.0 h1ae5b81_3 conda-forge
libopenvino-paddle-frontend 2025.0.0 h1ae5b81_3 conda-forge
libopenvino-pytorch-frontend 2025.0.0 h286801f_3 conda-forge
libopenvino-tensorflow-frontend 2025.0.0 heb6e3e1_3 conda-forge
libopenvino-tensorflow-lite-frontend 2025.0.0 h286801f_3 conda-forge
libopus 1.5.2 h48c0fde_0 conda-forge
libpng 1.6.49 h3783ad8_0 conda-forge
libpq 17.5 h6896619_0 conda-forge
libprotobuf 5.29.3 hccd9074_1 conda-forge
librsvg 2.58.4 h266df6f_3 conda-forge
libsodium 1.0.20 h99b78c6_0 conda-forge
libsqlite 3.50.1 h6fb428d_7 conda-forge
libssh2 1.11.1 h1590b86_0 conda-forge
libtiff 4.7.0 h2f21f7c_5 conda-forge
libusb 1.0.29 hbc156a2_0 conda-forge
libvorbis 1.3.7 h9f76cd9_0 conda-forge
libvpx 1.14.1 h7bae524_0 conda-forge
libwebp-base 1.5.0 h2471fea_0 conda-forge
libxcb 1.17.0 hdb1d25a_0 conda-forge
libxml2 2.13.8 h52572c6_0 conda-forge
libxslt 1.1.39 h223e5b9_0 conda-forge
libzlib 1.3.1 h8359307_2 conda-forge
libzopfli 1.0.3 h9f76cd9_0 conda-forge
llvm-openmp 20.1.7 hdb05f8b_0 conda-forge
lz4-c 1.10.0 h286801f_1 conda-forge
markdown 3.7 pypi_0 pypi
markdown-it-py 3.0.0 pyhd8ed1ab_1 conda-forge
markupsafe 3.0.2 pypi_0 pypi
matplotlib-base 3.8.4 py39h15359f4_2 conda-forge
mdurl 0.1.2 pyhd8ed1ab_1 conda-forge
munkres 1.1.4 pyhd8ed1ab_1 conda-forge
ncurses 6.5 h5e97a16_3 conda-forge
ndx-pose 0.1.1 pyhd8ed1ab_0 conda-forge
networkx 3.2.1 pyhd8ed1ab_0 conda-forge
nixio 1.5.4 pypi_0 pypi
nspr 4.36 h5833ebf_0 conda-forge
nss 3.113 ha3c76ea_0 conda-forge
numpy 1.24.4 pypi_0 pypi
oauthlib 3.2.2 pypi_0 pypi
opencv 4.11.0 qt6_py39hb1f062c_609 conda-forge
openexr 3.3.4 h37c74dd_0 conda-forge
openh264 2.6.0 hb5b2745_0 conda-forge
openjpeg 2.5.3 h8a3d83b_0 conda-forge
openldap 2.6.10 hbe55e7a_0 conda-forge
openssl 3.5.0 h81ee809_1 conda-forge
opt-einsum 3.4.0 pypi_0 pypi
packaging 25.0 pyh29332c3_1 conda-forge
pandas 2.2.3 py39hc5ad87a_1 conda-forge
pango 1.56.3 h5fd7515_1 conda-forge
patsy 1.0.1 pyhd8ed1ab_1 conda-forge
pcre2 10.45 ha881caa_0 conda-forge
pillow 11.2.1 py39hfea3036_0 conda-forge
pip 25.1.1 pyh8b19718_0 conda-forge
pixman 0.46.2 h2f9eb0b_0 conda-forge
pkgutil-resolve-name 1.3.10 pyhd8ed1ab_2 conda-forge
protobuf 3.19.6 pypi_0 pypi
psutil 7.0.0 py39hf3bc14e_0 conda-forge
pthread-stubs 0.4 hd74edd7_1002 conda-forge
pugixml 1.15 hd3d436d_0 conda-forge
py-opencv 4.11.0 qt6_py39h0eb5886_609 conda-forge
pyasn1 0.6.1 pypi_0 pypi
pyasn1-modules 0.4.1 pypi_0 pypi
pygments 2.19.2 pyhd8ed1ab_0 conda-forge
pykalman 0.9.7 pyhd8ed1ab_1 conda-forge
pynwb 2.8.3 pyhd8ed1ab_1 conda-forge
pyparsing 3.2.3 pyhd8ed1ab_1 conda-forge
pyside2 5.15.15 py39heabe5ed_0 conda-forge
python 3.9.23 h7139b31_0_cpython conda-forge
python-dateutil 2.9.0.post0 pyhe01879c_2 conda-forge
python-rapidjson 1.20 py39h941272d_1 conda-forge
python-tzdata 2025.2 pyhd8ed1ab_0 conda-forge
python_abi 3.9 7_cp39 conda-forge
pytz 2024.1 pyhd8ed1ab_0 conda-forge
pywavelets 1.6.0 py39h161d348_0 conda-forge
pyyaml 6.0.2 py39hefdd603_2 conda-forge
pyzmq 27.0.0 py39h80d5f2a_0 conda-forge
qimage2ndarray 1.10.0 pypi_0 pypi
qt-main 5.15.15 h67564f6_4 conda-forge
qt6-main 6.9.1 h9cca212_1 conda-forge
qtpy 2.4.3 pyhd8ed1ab_1 conda-forge
qudida 0.0.4 pyhd8ed1ab_0 conda-forge
rav1e 0.7.1 h0716509_3 conda-forge
readline 8.2 h1d1bf99_2 conda-forge
referencing 0.36.2 pyh29332c3_0 conda-forge
requests 2.32.3 pypi_0 pypi
requests-oauthlib 2.0.0 pypi_0 pypi
rich 14.0.0 pyh29332c3_0 conda-forge
rpds-py 0.25.1 py39h51e8d5a_0 conda-forge
ruamel.yaml 0.18.14 py39hf3bc14e_0 conda-forge
ruamel.yaml.clib 0.2.8 py39h57695bc_1 conda-forge
scikit-image 0.24.0 py39h998126f_1 conda-forge
scikit-learn 1.0 py39h12ba089_1 conda-forge
scikit-video 1.1.11 pyhecae5ae_1 conda-forge
scipy 1.9.0 py39h14896cb_0 conda-forge
sdl2 2.32.54 ha1acc90_0 conda-forge
sdl3 3.2.16 h92d3ae7_0 conda-forge
seaborn 0.13.2 hd8ed1ab_3 conda-forge
seaborn-base 0.13.2 pyhd8ed1ab_3 conda-forge
segmentation-models 1.0.1 pypi_0 pypi
setuptools 80.9.0 pyhff2d567_0 conda-forge
six 1.15.0 pypi_0 pypi
sleap 1.4.1 pypi_0 pypi
snappy 1.2.1 h98b9ce2_1 conda-forge
statsmodels 0.14.4 py39h914ef23_0 conda-forge
svt-av1 3.0.2 h8ab69cd_0 conda-forge
tbb 2022.1.0 h9541205_0 conda-forge
tensorboard 2.9.1 pypi_0 pypi
tensorboard-data-server 0.6.1 pypi_0 pypi
tensorboard-plugin-wit 1.8.1 pypi_0 pypi
tensorflow-estimator 2.9.0 pypi_0 pypi
tensorflow-hub 0.12.0 pypi_0 pypi
tensorflow-macos 2.9.2 pypi_0 pypi
tensorflow-metal 0.5.0 pypi_0 pypi
termcolor 2.5.0 pypi_0 pypi
threadpoolctl 3.6.0 pyhecae5ae_0 conda-forge
tifffile 2024.6.18 pyhd8ed1ab_0 conda-forge
tk 8.6.13 h892fb3f_2 conda-forge
typing-extensions 4.14.0 h32cad80_0 conda-forge
typing_extensions 4.14.0 pyhe01879c_0 conda-forge
tzdata 2025b h78e105d_0 conda-forge
tzlocal 5.2 pypi_0 pypi
unicodedata2 16.0.0 py39hf3bc14e_0 conda-forge
urllib3 2.2.3 pypi_0 pypi
werkzeug 3.1.3 pypi_0 pypi
wheel 0.45.1 pyhd8ed1ab_1 conda-forge
wrapt 1.17.0 pypi_0 pypi
x264 1!164.3095 h57fd34a_2 conda-forge
x265 3.5 hbc6ce65_3 conda-forge
xorg-libxau 1.0.12 h5505292_0 conda-forge
xorg-libxdmcp 1.1.5 hd74edd7_0 conda-forge
yaml 0.2.5 h3422bc3_2 conda-forge
zeromq 4.3.5 hc1bb282_7 conda-forge
zfp 1.0.1 h1c5d8ea_2 conda-forge
zipp 3.23.0 pyhd8ed1ab_0 conda-forge
zlib-ng 2.2.4 h13dfb9a_0 conda-forge
zstd 1.5.7 h6491c7d_2 conda-forge
==========PIP==========
absl-py==2.1.0
albumentations @ file:///home/conda/feedstock_root/build_artifacts/albumentations_1686576355052/work
astunparse==1.6.3
attrs @ file:///home/conda/feedstock_root/build_artifacts/attrs_1741918516150/work
cached-property @ file:///home/conda/feedstock_root/build_artifacts/cached_property_1615209429212/work
cachetools==5.5.0
cattrs @ file:///home/conda/feedstock_root/build_artifacts/cattrs_1604136207372/work
certifi @ file:///home/conda/feedstock_root/build_artifacts/certifi_1749972191589/work/certifi
charset-normalizer==3.4.0
contourpy @ file:///Users/runner/miniforge3/conda-bld/contourpy_1712429965428/work
cycler @ file:///home/conda/feedstock_root/build_artifacts/cycler_1733332471406/work
efficientnet==1.0.0
flatbuffers==1.12
fonttools @ file:///Users/runner/miniforge3/conda-bld/fonttools_1749848432919/work
gast==0.4.0
google-auth==2.37.0
google-auth-oauthlib==0.4.6
google-pasta==0.2.0
grpcio==1.68.1
h5py @ file:///Users/runner/miniforge3/conda-bld/h5py_1749299300616/work
hdmf @ file:///home/conda/feedstock_root/build_artifacts/hdmf_1734832004472/work
idna==3.10
image-classifiers==1.0.0
imagecodecs @ file:///Users/runner/miniforge3/conda-bld/imagecodecs_1747074361963/work
imageio @ file:///home/conda/feedstock_root/build_artifacts/imageio_1738273805233/work
imageio-ffmpeg @ file:///home/conda/feedstock_root/build_artifacts/imageio-ffmpeg_1737102630951/work
imgstore==0.2.9
importlib_metadata @ file:///home/conda/feedstock_root/build_artifacts/bld/rattler-build_importlib-metadata_1747934053/work
importlib_resources @ file:///home/conda/feedstock_root/build_artifacts/importlib_resources_1736252299705/work
joblib @ file:///home/conda/feedstock_root/build_artifacts/joblib_1748019130050/work
jsmin @ file:///home/conda/feedstock_root/build_artifacts/jsmin_1734957271732/work
jsonpickle==1.2
jsonschema @ file:///home/conda/feedstock_root/build_artifacts/jsonschema_1748294245630/work
jsonschema-specifications @ file:///tmp/tmpuvkyqc9y/src
keras @ file:///home/conda/feedstock_root/build_artifacts/keras_1652925255303/work/keras-2.9.0-py2.py3-none-any.whl
Keras-Applications==1.0.8
Keras-Preprocessing==1.1.2
kiwisolver @ file:///Users/runner/miniforge3/conda-bld/kiwisolver_1725459226886/work
lazy_loader @ file:///home/conda/feedstock_root/build_artifacts/lazy-loader_1733636780672/work
libclang==18.1.1
Markdown==3.7
markdown-it-py @ file:///home/conda/feedstock_root/build_artifacts/markdown-it-py_1733250460757/work
MarkupSafe==3.0.2
matplotlib @ file:///Users/runner/miniforge3/conda-bld/matplotlib-suite_1715976202591/work
mdurl @ file:///home/conda/feedstock_root/build_artifacts/mdurl_1733255585584/work
munkres==1.1.4
ndx-pose @ file:///home/conda/feedstock_root/build_artifacts/ndx-pose_1706810229855/work
networkx @ file:///home/conda/feedstock_root/build_artifacts/networkx_1698504735452/work
nixio==1.5.4
numpy @ file:///Users/runner/miniforge3/conda-bld/numpy_1653325964689/work
oauthlib==3.2.2
opencv-python==4.11.0
opencv-python-headless==4.11.0
opt_einsum==3.4.0
packaging @ file:///home/conda/feedstock_root/build_artifacts/bld/rattler-build_packaging_1745345660/work
pandas @ file:///Users/runner/miniforge3/conda-bld/pandas_1726878429351/work
patsy @ file:///home/conda/feedstock_root/build_artifacts/patsy_1733792384640/work
pillow @ file:///Users/runner/miniforge3/conda-bld/pillow_1746646280087/work
pkgutil_resolve_name @ file:///home/conda/feedstock_root/build_artifacts/pkgutil-resolve-name_1733344503739/work
protobuf==3.19.6
psutil @ file:///Users/runner/miniforge3/conda-bld/psutil_1740663174295/work
pyasn1==0.6.1
pyasn1_modules==0.4.1
Pygments @ file:///home/conda/feedstock_root/build_artifacts/pygments_1750615794071/work
pykalman @ file:///home/conda/feedstock_root/build_artifacts/pykalman_1736266771458/work
pynwb @ file:///home/conda/feedstock_root/build_artifacts/pynwb_1734810904139/work
pyparsing @ file:///home/conda/feedstock_root/build_artifacts/pyparsing_1743089729650/work
PySide2==5.15.15
python-dateutil @ file:///home/conda/feedstock_root/build_artifacts/bld/rattler-build_python-dateutil_1751104122/work
python-rapidjson @ file:///Users/runner/miniforge3/conda-bld/python-rapidjson_1740176765140/work
pytz @ file:///home/conda/feedstock_root/build_artifacts/pytz_1706886791323/work
PyWavelets==1.6.0
PyYAML @ file:///Users/runner/miniforge3/conda-bld/pyyaml_1737454732336/work
pyzmq @ file:///Users/runner/miniforge3/conda-bld/pyzmq_1749898505641/work
qimage2ndarray==1.10.0
QtPy @ file:///home/conda/feedstock_root/build_artifacts/qtpy_1749167083742/work
qudida @ file:///home/conda/feedstock_root/build_artifacts/qudida_1651101164121/work
referencing @ file:///home/conda/feedstock_root/build_artifacts/bld/rattler-build_referencing_1737836872/work
requests==2.32.3
requests-oauthlib==2.0.0
rich @ file:///home/conda/feedstock_root/build_artifacts/bld/rattler-build_rich_1743371105/work/dist
rpds-py @ file:///Users/runner/miniforge3/conda-bld/bld/rattler-build_rpds-py_1747837782/work
rsa==4.9
ruamel.yaml @ file:///Users/runner/miniforge3/conda-bld/ruamel.yaml_1749480012884/work
ruamel.yaml.clib @ file:///Users/runner/miniforge3/conda-bld/ruamel.yaml.clib_1728724493881/work
scikit-image @ file:///Users/runner/miniforge3/conda-bld/scikit-image_1719499452114/work/dist/scikit_image-0.24.0-cp39-cp39-macosx_11_0_arm64.whl#sha256=99a9d204a057340ff924741a9aa0c4fdd1ef9e918063988d46ba4645bcedbc64
scikit-learn @ file:///Users/runner/miniforge3/conda-bld/scikit-learn_1632611447519/work
scikit-video @ file:///home/conda/feedstock_root/build_artifacts/scikit-video_1747341405136/work
scipy==1.9.0
seaborn @ file:///home/conda/feedstock_root/build_artifacts/seaborn-split_1733730015268/work
segmentation-models==1.0.1
shiboken2==5.15.15
six==1.15.0
sleap==1.4.1
statsmodels @ file:///Users/runner/miniforge3/conda-bld/statsmodels_1727986732968/work
tensorboard==2.9.1
tensorboard-data-server==0.6.1
tensorboard-plugin-wit==1.8.1
tensorflow-estimator==2.9.0
tensorflow-hub==0.12.0
tensorflow-macos==2.9.2
tensorflow-metal==0.5.0
termcolor==2.5.0
threadpoolctl @ file:///home/conda/feedstock_root/build_artifacts/threadpoolctl_1741878222898/work
tifffile @ file:///home/conda/feedstock_root/build_artifacts/tifffile_1718963615451/work
typing_extensions @ file:///home/conda/feedstock_root/build_artifacts/bld/rattler-build_typing_extensions_1748959427/work
tzdata @ file:///home/conda/feedstock_root/build_artifacts/python-tzdata_1742745135198/work
tzlocal==5.2
unicodedata2 @ file:///Users/runner/miniforge3/conda-bld/unicodedata2_1736692557404/work
urllib3==2.2.3
Werkzeug==3.1.3
wrapt==1.17.0
zipp @ file:///home/conda/feedstock_root/build_artifacts/zipp_1749421620841/work
==========NVIDIA==========
unable to locate nvidia-smi
Screenshots
How to reproduce
- install through Mac, on Mac M4 MacOS 15.5
- activate sleap environment and try to run sleap-label
- error, python crashses
Hi @hamiltonoh !
Could you try uninstalling qt6, conda uninstall qt6-main and retain all the other qt packages?
Thanks,
Divya
Hi Divya!
Thanks for your response. I tried to run conda uninstall qt6-main, but it attempted to remove all the dependencies again. I then ran conda remove --force qt6-main, but when I tried to run sleap-label afterwards, there was another error.
(base) hamilton.oh@MLSJ7RC6YM9NP ~ % conda activate sleap
(sleap) hamilton.oh@MLSJ7RC6YM9NP ~ % conda conda list | grep qtc
(sleap) hamilton.oh@MLSJ7RC6YM9NP ~ % conda list | grep qt
libopencv 4.11.0 qt6_py39h9d66867_609 conda-forge
opencv 4.11.0 qt6_py39hb1f062c_609 conda-forge
py-opencv 4.11.0 qt6_py39h0eb5886_609 conda-forge
qt-main 5.15.15 h67564f6_4 conda-forge
qt6-main 6.9.1 h9cca212_1 conda-forge
qtpy 2.4.3 pyhd8ed1ab_1 conda-forge
(sleap) hamilton.oh@MLSJ7RC6YM9NP ~ % conda uninstall qt6-main
Channels:
- defaults
Platform: osx-arm64
Collecting package metadata (repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /opt/miniconda3/envs/sleap
removed specs:
- qt6-main
The following packages will be REMOVED:
albumentations-1.3.1-pyhd8ed1ab_0
aom-3.9.1-h7bae524_0
attrs-25.3.0-pyh71513ae_0
blosc-1.21.6-h7dd00d9_1
brotli-1.1.0-h5505292_3
brotli-bin-1.1.0-h5505292_3
brunsli-0.1-h9f76cd9_0
c-ares-1.34.5-h5505292_0
c-blosc2-2.17.1-h9cbb436_0
cached-property-1.5.2-hd8ed1ab_1
cached_property-1.5.2-pyha770c72_1
cattrs-1.1.1-pyhd8ed1ab_0
charls-2.4.2-h13dd4ca_0
contourpy-1.2.1-py39h48c5dd5_0
cycler-0.12.1-pyhd8ed1ab_1
cyrus-sasl-2.1.28-ha1cbb27_0
dav1d-1.2.1-hb547adb_0
double-conversion-3.3.1-h286801f_0
ffmpeg-7.1.1-gpl_h20db955_106
fonttools-4.58.4-py39hefdd603_0
gdk-pixbuf-2.42.12-h7ddc832_0
giflib-5.2.2-h93a5062_0
glib-2.84.2-h85e5b2e_0
glib-tools-2.84.2-h1dc7a0c_0
gmp-6.3.0-h7bae524_2
gst-plugins-base-1.24.11-h3c5c1d0_0
gstreamer-1.24.11-hfe24232_0
h5py-3.14.0-nompi_py39h1bcc307_100
hdf5-1.14.6-nompi_ha698983_101
hdmf-3.14.6-pyhd8ed1ab_0
imagecodecs-2024.12.30-py39hcae9eef_1
imageio-2.37.0-pyhfb79c49_0
imageio-ffmpeg-0.6.0-pyhd8ed1ab_0
imath-3.1.12-h025cafa_0
importlib-metadata-8.7.0-pyhe01879c_1
importlib-resources-6.5.2-pyhd8ed1ab_0
importlib_resources-6.5.2-pyhd8ed1ab_0
jasper-4.2.5-h743e416_0
joblib-1.5.1-pyhd8ed1ab_0
jsmin-3.0.1-pyhd8ed1ab_1
jsonpickle-1.2-py_0
jsonschema-4.24.0-pyhd8ed1ab_0
jsonschema-specifications-2025.4.1-pyh29332c3_0
jxrlib-1.1-h93a5062_3
keras-2.9.0-pyhd8ed1ab_0
kiwisolver-1.4.7-py39h157d57c_0
krb5-1.21.3-h237132a_0
lame-3.100-h1a8c8d9_1003
lazy-loader-0.4-pyhd8ed1ab_2
lazy_loader-0.4-pyhd8ed1ab_2
lcms2-2.17-h7eeda09_0
lerc-4.0.0-hd64df32_1
libabseil-20250127.1-cxx17_h07bc746_0
libaec-1.1.4-h51d1e36_0
libasprintf-0.24.1-h493aca8_0
libavif16-1.3.0-hf1e31eb_0
libblas-3.9.0-20_osxarm64_openblas
libbrotlicommon-1.1.0-h5505292_3
libbrotlidec-1.1.0-h5505292_3
libbrotlienc-1.1.0-h5505292_3
libcblas-3.9.0-20_osxarm64_openblas
libclang-cpp17-17.0.6-default_hf90f093_8
libclang-cpp18.1-18.1.8-default_hf90f093_10
libclang13-20.1.7-default_hee4fbb3_0
libcurl-8.14.1-h73640d1_0
libdeflate-1.24-h5773f1b_0
libedit-3.1.20250104-pl5321hafb1f1b_0
libev-4.33-h93a5062_2
libgettextpo-0.24.1-h493aca8_0
libgfortran-5.0.0-14_2_0_h6c33f7e_103
libgfortran5-14.2.0-h6c33f7e_103
libhwloc-2.11.2-default_hbce5d74_1001
libhwy-1.2.0-h9a9ea7e_0
libintl-devel-0.24.1-h493aca8_0
libjpeg-turbo-3.1.0-h5505292_0
libjxl-0.11.1-h72d67bc_2
liblapack-3.9.0-20_osxarm64_openblas
liblapacke-3.9.0-20_osxarm64_openblas
libllvm17-17.0.6-hc4b4ae8_3
libllvm18-18.1.8-hc4b4ae8_3
libnghttp2-1.64.0-h6d7220d_0
libntlm-1.8-h5505292_0
libogg-1.3.5-h48c0fde_1
libopenblas-0.3.25-openmp_h6c19121_0
libopencv-4.11.0-qt6_py39h9d66867_609
libopenvino-2025.0.0-h3f17238_3
libopenvino-arm-cpu-plugin-2025.0.0-h3f17238_3
libopenvino-auto-batch-plugin-2025.0.0-h7f72211_3
libopenvino-auto-plugin-2025.0.0-h7f72211_3
libopenvino-hetero-plugin-2025.0.0-h718ad69_3
libopenvino-ir-frontend-2025.0.0-h718ad69_3
libopenvino-onnx-frontend-2025.0.0-h1ae5b81_3
libopenvino-paddle-frontend-2025.0.0-h1ae5b81_3
libopenvino-pytorch-frontend-2025.0.0-h286801f_3
libopenvino-tensorflow-frontend-2025.0.0-heb6e3e1_3
libopenvino-tensorflow-lite-frontend-2025.0.0-h286801f_3
libopus-1.5.2-h48c0fde_0
libpq-17.5-h6896619_0
libprotobuf-5.29.3-hccd9074_1
librsvg-2.58.4-h266df6f_3
libsodium-1.0.20-h99b78c6_0
libssh2-1.11.1-h1590b86_0
libtiff-4.7.0-h2f21f7c_5
libvorbis-1.3.7-h9f76cd9_0
libvpx-1.14.1-h7bae524_0
libwebp-base-1.5.0-h2471fea_0
libxcb-1.17.0-hdb1d25a_0
libxslt-1.1.39-h223e5b9_0
libzopfli-1.0.3-h9f76cd9_0
llvm-openmp-20.1.7-hdb05f8b_0
lz4-c-1.10.0-h286801f_1
markdown-it-py-3.0.0-pyhd8ed1ab_1
matplotlib-base-3.8.4-py39h15359f4_2
mdurl-0.1.2-pyhd8ed1ab_1
munkres-1.1.4-pyhd8ed1ab_1
ndx-pose-0.1.1-pyhd8ed1ab_0
networkx-3.2.1-pyhd8ed1ab_0
nspr-4.36-h5833ebf_0
nss-3.113-ha3c76ea_0
numpy-1.22.4-py39h7df2422_0
opencv-4.11.0-qt6_py39hb1f062c_609
openexr-3.3.4-h37c74dd_0
openh264-2.6.0-hb5b2745_0
openjpeg-2.5.3-h8a3d83b_0
openldap-2.6.10-hbe55e7a_0
packaging-25.0-pyh29332c3_1
pandas-2.2.3-py39hc5ad87a_1
pango-1.56.3-h5fd7515_1
patsy-1.0.1-pyhd8ed1ab_1
pillow-11.2.1-py39hfea3036_0
pkgutil-resolve-name-1.3.10-pyhd8ed1ab_2
psutil-7.0.0-py39hf3bc14e_0
pthread-stubs-0.4-hd74edd7_1002
pugixml-1.15-hd3d436d_0
py-opencv-4.11.0-qt6_py39h0eb5886_609
pygments-2.19.2-pyhd8ed1ab_0
pykalman-0.9.7-pyhd8ed1ab_1
pynwb-2.8.3-pyhd8ed1ab_1
pyparsing-3.2.3-pyhd8ed1ab_1
pyside2-5.15.15-py39heabe5ed_0
python-dateutil-2.9.0.post0-pyhe01879c_2
python-rapidjson-1.20-py39h941272d_1
python-tzdata-2025.2-pyhd8ed1ab_0
python_abi-3.9-7_cp39
pytz-2024.1-pyhd8ed1ab_0
pywavelets-1.6.0-py39h161d348_0
pyyaml-6.0.2-py39hefdd603_2
pyzmq-27.0.0-py39h80d5f2a_0
qt-main-5.15.15-h67564f6_4
qt6-main-6.9.1-h9cca212_1
qtpy-2.4.3-pyhd8ed1ab_1
qudida-0.0.4-pyhd8ed1ab_0
rav1e-0.7.1-h0716509_3
referencing-0.36.2-pyh29332c3_0
rich-14.0.0-pyh29332c3_0
rpds-py-0.25.1-py39h51e8d5a_0
ruamel.yaml-0.18.14-py39hf3bc14e_0
ruamel.yaml.clib-0.2.8-py39h57695bc_1
scikit-image-0.24.0-py39h998126f_1
scikit-learn-1.0-py39h12ba089_1
scikit-video-1.1.11-pyhecae5ae_1
scipy-1.9.0-py39h14896cb_0
sdl2-2.32.54-ha1acc90_0
seaborn-0.13.2-hd8ed1ab_3
seaborn-base-0.13.2-pyhd8ed1ab_3
six-1.17.0-pyhd8ed1ab_0
sleap-1.4.1-py39_0
snappy-1.2.1-h98b9ce2_1
statsmodels-0.14.4-py39h914ef23_0
svt-av1-3.0.2-h8ab69cd_0
tbb-2022.1.0-h9541205_0
threadpoolctl-3.6.0-pyhecae5ae_0
tifffile-2024.6.18-pyhd8ed1ab_0
typing-extensions-4.14.0-h32cad80_0
typing_extensions-4.14.0-pyhe01879c_0
unicodedata2-16.0.0-py39hf3bc14e_0
x264-1!164.3095-h57fd34a_2
x265-3.5-hbc6ce65_3
xorg-libxau-1.0.12-h5505292_0
xorg-libxdmcp-1.1.5-hd74edd7_0
yaml-0.2.5-h3422bc3_2
zeromq-4.3.5-hc1bb282_7
zfp-1.0.1-h1c5d8ea_2
zipp-3.23.0-pyhd8ed1ab_0
zlib-ng-2.2.4-h13dfb9a_0
Proceed ([y]/n)? n
CondaSystemExit: Exiting.
(sleap) hamilton.oh@MLSJ7RC6YM9NP ~ % conda list | grep qt
libopencv 4.11.0 qt6_py39h9d66867_609 conda-forge
opencv 4.11.0 qt6_py39hb1f062c_609 conda-forge
py-opencv 4.11.0 qt6_py39h0eb5886_609 conda-forge
qt-main 5.15.15 h67564f6_4 conda-forge
qt6-main 6.9.1 h9cca212_1 conda-forge
qtpy 2.4.3 pyhd8ed1ab_1 conda-forge
(sleap) hamilton.oh@MLSJ7RC6YM9NP ~ % conda remove --force qt6-main
## Package Plan ##
environment location: /opt/miniconda3/envs/sleap
removed specs:
- qt6-main
The following packages will be REMOVED:
qt6-main-6.9.1-h9cca212_1
Proceed ([y]/n)? y
Downloading and Extracting Packages:
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
(sleap) hamilton.oh@MLSJ7RC6YM9NP ~ % sleap-label
Traceback (most recent call last):
File "/opt/miniconda3/envs/sleap/bin/sleap-label", line 33, in <module>
sys.exit(load_entry_point('sleap==1.4.1', 'console_scripts', 'sleap-label')())
File "/opt/miniconda3/envs/sleap/bin/sleap-label", line 25, in importlib_load_entry_point
return next(matches).load()
File "/opt/miniconda3/envs/sleap/lib/python3.9/importlib/metadata.py", line 86, in load
module = import_module(match.group('module'))
File "/opt/miniconda3/envs/sleap/lib/python3.9/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
File "<frozen importlib._bootstrap>", line 972, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
File "<frozen importlib._bootstrap>", line 972, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 850, in exec_module
File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
File "/opt/miniconda3/envs/sleap/lib/python3.9/site-packages/sleap/__init__.py", line 10, in <module>
from sleap.io.dataset import Labels, load_file
File "/opt/miniconda3/envs/sleap/lib/python3.9/site-packages/sleap/io/dataset.py", line 72, in <module>
from sleap.instance import (
File "/opt/miniconda3/envs/sleap/lib/python3.9/site-packages/sleap/instance.py", line 32, in <module>
from sleap.io.video import Video
File "/opt/miniconda3/envs/sleap/lib/python3.9/site-packages/sleap/io/video.py", line 7, in <module>
import cv2
File "/opt/miniconda3/envs/sleap/lib/python3.9/site-packages/cv2/__init__.py", line 181, in <module>
bootstrap()
File "/opt/miniconda3/envs/sleap/lib/python3.9/site-packages/cv2/__init__.py", line 153, in bootstrap
native_module = importlib.import_module("cv2")
File "/opt/miniconda3/envs/sleap/lib/python3.9/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
ImportError: dlopen(/opt/miniconda3/envs/sleap/lib/python3.9/site-packages/cv2/python-3.9/cv2.cpython-39-darwin.so, 0x0002): Library not loaded: @rpath/libQt6Widgets.6.dylib
Referenced from: <0D3DDBBA-6F81-3B66-A7F0-7EDB55DB3FDC> /opt/miniconda3/envs/sleap/lib/libopencv_highgui.4.11.0.dylib
Reason: tried: '/opt/miniconda3/envs/sleap/lib/libQt6Widgets.6.dylib' (no such file), '/opt/miniconda3/envs/sleap/lib/libQt6Widgets.6.dylib' (no such file), '/opt/miniconda3/envs/sleap/lib/python3.9/site-packages/cv2/python-3.9/../../../../libQt6Widgets.6.dylib' (no such file), '/opt/miniconda3/envs/sleap/lib/python3.9/site-packages/cv2/python-3.9/../../../../libQt6Widgets.6.dylib' (no such file), '/opt/miniconda3/envs/sleap/bin/../lib/libQt6Widgets.6.dylib' (no such file), '/opt/miniconda3/envs/sleap/bin/../lib/libQt6Widgets.6.dylib' (no such file), '/usr/local/lib/libQt6Widgets.6.dylib' (no such file), '/usr/lib/libQt6Widgets.6.dylib' (no such file, not in dyld cache)
Removing qt-main instead of qt6-main results in a similar error.
(sleap2) hamilton.oh@MLSJ7RC6YM9NP ~ % sleap-label
Traceback (most recent call last):
File "/opt/miniconda3/envs/sleap2/bin/sleap-label", line 33, in <module>
sys.exit(load_entry_point('sleap==1.4.1', 'console_scripts', 'sleap-label')())
File "/opt/miniconda3/envs/sleap2/bin/sleap-label", line 25, in importlib_load_entry_point
return next(matches).load()
File "/opt/miniconda3/envs/sleap2/lib/python3.9/importlib/metadata.py", line 86, in load
module = import_module(match.group('module'))
File "/opt/miniconda3/envs/sleap2/lib/python3.9/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
File "<frozen importlib._bootstrap>", line 972, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
File "<frozen importlib._bootstrap>", line 972, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 850, in exec_module
File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
File "/opt/miniconda3/envs/sleap2/lib/python3.9/site-packages/sleap/__init__.py", line 10, in <module>
from sleap.io.dataset import Labels, load_file
File "/opt/miniconda3/envs/sleap2/lib/python3.9/site-packages/sleap/io/dataset.py", line 83, in <module>
from sleap.gui.dialogs.missingfiles import MissingFilesDialog
File "/opt/miniconda3/envs/sleap2/lib/python3.9/site-packages/sleap/gui/dialogs/missingfiles.py", line 10, in <module>
from qtpy import QtWidgets, QtCore, QtGui
File "/opt/miniconda3/envs/sleap2/lib/python3.9/site-packages/qtpy/__init__.py", line 293, in <module>
raise QtBindingsNotFoundError from None
qtpy.QtBindingsNotFoundError: No Qt bindings could be found
I get the exact same error, after installing sleap 1.4.1 on an M2 Macbook pro, using the recommended conda method.
This is what conda list | grep -i qt returns:
libopencv 4.11.0 qt6_py39h9d66867_609 conda-forge
opencv 4.11.0 qt6_py39hb1f062c_609 conda-forge
py-opencv 4.11.0 qt6_py39h0eb5886_609 conda-forge
qt-main 5.15.15 h67564f6_4 conda-forge
qt6-main 6.9.1 h9cca212_1 conda-forge
qtpy 2.4.3 pyhd8ed1ab_1 conda-forge
Hi all! I’m having the same problem on my M1 Mac. The last time I used SLEAP was in April and I did not have any issues then, but I got the error message just now when I tried to run sleap-label. I also tried to run “conda uninstall qt6-main,” but had the same issues as those above.
(UPDATE)
I tried to replicate the same error in Macbook Air M3 and then tried the conda uninstall fix and it worked for me. This is what I did:
-> conda create -y -n sleap -c conda-forge -c anaconda -c sleap sleap=1.4.1
-> conda activate sleap
-> sleap-label # throws qt error
-> conda uninstall qt6-main
-> sleap-label # (now works)
However, when i run the conda uninstall, it only tries to remove some of qt6-main dependent packages and not all of them (as shown in your logs). For some reason, only the defaults channel is being used when you try to uninstall.
divyasesh@Mac ~ % conda uninstall qt6-main
Channels:
- defaults
- conda-forge
- sleap
Platform: osx-arm64
Collecting package metadata (repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /opt/anaconda3/envs/sleap-v2
removed specs:
- qt6-main
The following packages will be REMOVED:
double-conversion-3.3.1-h286801f_0
libclang-cpp18.1-18.1.8-default_hf90f093_10
libllvm18-18.1.8-hc4b4ae8_3
qt6-main-6.9.1-h9cca212_1
The following packages will be DOWNGRADED:
libopencv 4.11.0-qt6_py39h9d66867_609 --> 4.11.0-headless_py39h766dbac_9
opencv 4.11.0-qt6_py39hb1f062c_609 --> 4.11.0-headless_py39hf351156_9
py-opencv 4.11.0-qt6_py39h0eb5886_609 --> 4.11.0-headless_py39ha596c8e_9
Proceed ([y]/n)? y
Downloading and Extracting Packages:
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
Hello! Is there a final solution to this? When i uninstall qt6 - all of sleap disappears! :( Nothing seems to work anymore
(base) WR34R6T7X1:~ polisev$ conda activate sleap
(sleap) WR34R6T7X1:~ polisev$ conda list | grep -i qt
libopencv 4.12.0 qt6_py39h93dbde7_600 conda-forge
opencv 4.12.0 qt6_py39hb1f062c_600 conda-forge
py-opencv 4.12.0 qt6_py39h0eb5886_600 conda-forge
qt-main 5.15.15 h67564f6_4 conda-forge
qt6-main 6.9.1 h9cca212_1 conda-forge
qtpy 2.4.3 pyhd8ed1ab_1 conda-forge
(sleap) WR34R6T7X1:~ polisev$ conda uninstall qt6-main
/opt/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
/opt/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
Channels:
- defaults
- conda-forge
- sleap
Platform: osx-arm64
Collecting package metadata (repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /opt/miniconda3/envs/sleap
removed specs:
- qt6-main
The following packages will be REMOVED:
albumentations-1.3.1-pyhd8ed1ab_0
attrs-25.3.0-pyh71513ae_0
blosc-1.21.6-h7dd00d9_1
brotli-1.1.0-h5505292_3
brotli-bin-1.1.0-h5505292_3
brunsli-0.1-h9f76cd9_0
c-ares-1.34.5-h5505292_0
c-blosc2-2.17.1-h9cbb436_0
cached-property-1.5.2-hd8ed1ab_1
cached_property-1.5.2-pyha770c72_1
cattrs-1.1.1-pyhd8ed1ab_0
charls-2.4.2-h13dd4ca_0
contourpy-1.2.1-py39h48c5dd5_0
cycler-0.12.1-pyhd8ed1ab_1
cyrus-sasl-2.1.28-ha1cbb27_0
double-conversion-3.3.1-h286801f_0
ffmpeg-7.1.1-gpl_h20db955_106
fonttools-4.58.5-py39hefdd603_0
gdk-pixbuf-2.42.12-h7ddc832_0
giflib-5.2.2-h93a5062_0
glib-2.84.2-h85e5b2e_0
glib-tools-2.84.2-h1dc7a0c_0
gmp-6.3.0-h7bae524_2
gst-plugins-base-1.24.11-h3c5c1d0_0
gstreamer-1.24.11-hfe24232_0
h5py-3.14.0-nompi_py39h1bcc307_100
hdf5-1.14.6-nompi_ha698983_101
hdmf-3.14.6-pyhd8ed1ab_0
imagecodecs-2024.12.30-py39hcae9eef_1
imageio-2.37.0-pyhfb79c49_0
imageio-ffmpeg-0.6.0-pyhd8ed1ab_0
imath-3.1.12-h025cafa_0
importlib-metadata-8.7.0-pyhe01879c_1
importlib-resources-6.5.2-pyhd8ed1ab_0
importlib_resources-6.5.2-pyhd8ed1ab_0
jasper-4.2.5-h743e416_0
joblib-1.5.1-pyhd8ed1ab_0
jsmin-3.0.1-pyhd8ed1ab_1
jsonpickle-1.2-py_0
jsonschema-4.24.0-pyhd8ed1ab_0
jsonschema-specifications-2025.4.1-pyh29332c3_0
jxrlib-1.1-h93a5062_3
keras-2.9.0-pyhd8ed1ab_0
kiwisolver-1.4.7-py39h157d57c_0
krb5-1.21.3-h237132a_0
lame-3.100-h1a8c8d9_1003
lazy-loader-0.4-pyhd8ed1ab_2
lazy_loader-0.4-pyhd8ed1ab_2
lcms2-2.17-h7eeda09_0
lerc-4.0.0-hd64df32_1
libabseil-20250127.1-cxx17_h07bc746_0
libaec-1.1.4-h51d1e36_0
libasprintf-0.25.1-h493aca8_0
libblas-3.9.0-20_osxarm64_openblas
libbrotlicommon-1.1.0-h5505292_3
libbrotlidec-1.1.0-h5505292_3
libbrotlienc-1.1.0-h5505292_3
libcblas-3.9.0-20_osxarm64_openblas
libclang-cpp17-17.0.6-default_hf90f093_8
libclang-cpp18.1-18.1.8-default_hf90f093_10
libclang13-20.1.7-default_hee4fbb3_0
libcurl-8.14.1-h73640d1_0
libdeflate-1.24-h5773f1b_0
libedit-3.1.20250104-pl5321hafb1f1b_0
libev-4.33-h93a5062_2
libgettextpo-0.25.1-h493aca8_0
libgfortran-5.0.0-14_2_0_h6c33f7e_103
libgfortran5-14.2.0-h6c33f7e_103
libhwloc-2.11.2-default_hbce5d74_1001
libhwy-1.2.0-h9a9ea7e_0
libintl-devel-0.25.1-h493aca8_0
libjpeg-turbo-3.1.0-h5505292_0
libjxl-0.11.1-h72d67bc_2
liblapack-3.9.0-20_osxarm64_openblas
liblapacke-3.9.0-20_osxarm64_openblas
libllvm17-17.0.6-hc4b4ae8_3
libllvm18-18.1.8-hc4b4ae8_3
libnghttp2-1.64.0-h6d7220d_0
libntlm-1.8-h5505292_0
libogg-1.3.5-h48c0fde_1
libopenblas-0.3.25-openmp_h6c19121_0
libopencv-4.12.0-qt6_py39h93dbde7_600
libopenvino-2025.0.0-h3f17238_3
libopenvino-arm-cpu-plugin-2025.0.0-h3f17238_3
libopenvino-auto-batch-plugin-2025.0.0-h7f72211_3
libopenvino-auto-plugin-2025.0.0-h7f72211_3
libopenvino-hetero-plugin-2025.0.0-h718ad69_3
libopenvino-ir-frontend-2025.0.0-h718ad69_3
libopenvino-onnx-frontend-2025.0.0-h1ae5b81_3
libopenvino-paddle-frontend-2025.0.0-h1ae5b81_3
libopenvino-pytorch-frontend-2025.0.0-h286801f_3
libopenvino-tensorflow-frontend-2025.0.0-heb6e3e1_3
libopenvino-tensorflow-lite-frontend-2025.0.0-h286801f_3
libopus-1.5.2-h48c0fde_0
libpq-17.5-h6896619_0
libprotobuf-5.29.3-hccd9074_1
librsvg-2.58.4-h266df6f_3
libsodium-1.0.20-h99b78c6_0
libssh2-1.11.1-h1590b86_0
libtiff-4.7.0-h2f21f7c_5
libvorbis-1.3.7-h9f76cd9_0
libvpx-1.14.1-h7bae524_0
libwebp-base-1.5.0-h2471fea_0
libxcb-1.17.0-hdb1d25a_0
libxslt-1.1.39-h223e5b9_0
libzopfli-1.0.3-h9f76cd9_0
llvm-openmp-20.1.7-hdb05f8b_0
lz4-c-1.10.0-h286801f_1
markdown-it-py-3.0.0-pyhd8ed1ab_1
matplotlib-base-3.8.4-py39h15359f4_2
mdurl-0.1.2-pyhd8ed1ab_1
munkres-1.1.4-pyhd8ed1ab_1
ndx-pose-0.1.1-pyhd8ed1ab_0
networkx-3.2.1-pyhd8ed1ab_0
nspr-4.36-h5833ebf_0
nss-3.113-ha3c76ea_0
numpy-1.22.4-py39h7df2422_0
opencv-4.12.0-qt6_py39hb1f062c_600
openexr-3.3.4-h37c74dd_0
openh264-2.6.0-hb5b2745_0
openjpeg-2.5.3-h8a3d83b_0
openldap-2.6.10-hbe55e7a_0
packaging-25.0-pyh29332c3_1
pandas-2.2.3-py39hc5ad87a_1
pango-1.56.4-h875632e_0
patsy-1.0.1-pyhd8ed1ab_1
pillow-11.3.0-py39hfea3036_0
pkgutil-resolve-name-1.3.10-pyhd8ed1ab_2
psutil-7.0.0-py39hf3bc14e_0
pthread-stubs-0.4-hd74edd7_1002
pugixml-1.15-hd3d436d_0
py-opencv-4.12.0-qt6_py39h0eb5886_600
pygments-2.19.2-pyhd8ed1ab_0
pykalman-0.9.7-pyhd8ed1ab_1
pynwb-2.8.3-pyhd8ed1ab_1
pyparsing-3.2.3-pyhd8ed1ab_1
pyside2-5.15.15-py39heabe5ed_0
python-dateutil-2.9.0.post0-pyhe01879c_2
python-rapidjson-1.20-py39h941272d_1
python-tzdata-2025.2-pyhd8ed1ab_0
python_abi-3.9-7_cp39
pytz-2024.1-pyhd8ed1ab_0
pywavelets-1.6.0-py39h161d348_0
pyyaml-6.0.2-py39hefdd603_2
pyzmq-27.0.0-py39h80d5f2a_0
qt-main-5.15.15-h67564f6_4
qt6-main-6.9.1-h9cca212_1
qtpy-2.4.3-pyhd8ed1ab_1
qudida-0.0.4-pyhd8ed1ab_0
referencing-0.36.2-pyh29332c3_0
rich-14.0.0-pyh29332c3_0
rpds-py-0.26.0-py39h51e8d5a_0
ruamel.yaml-0.18.14-py39hf3bc14e_0
ruamel.yaml.clib-0.2.8-py39h57695bc_1
scikit-image-0.24.0-py39h998126f_1
scikit-learn-1.0-py39h12ba089_1
scikit-video-1.1.11-pyhecae5ae_1
scipy-1.9.0-py39h14896cb_0
seaborn-0.13.2-hd8ed1ab_3
seaborn-base-0.13.2-pyhd8ed1ab_3
six-1.17.0-pyhd8ed1ab_0
sleap-1.4.1-py39_0
snappy-1.2.1-h98b9ce2_1
statsmodels-0.14.4-py39hbd04bc9_2
tbb-2022.1.0-h9541205_0
threadpoolctl-3.6.0-pyhecae5ae_0
tifffile-2024.6.18-pyhd8ed1ab_0
typing-extensions-4.14.1-h4440ef1_0
typing_extensions-4.14.1-pyhe01879c_0
unicodedata2-16.0.0-py39hf3bc14e_0
x264-1!164.3095-h57fd34a_2
x265-3.5-hbc6ce65_3
xorg-libxau-1.0.12-h5505292_0
xorg-libxdmcp-1.1.5-hd74edd7_0
yaml-0.2.5-h3422bc3_2
zeromq-4.3.5-hc1bb282_7
zfp-1.0.1-h1c5d8ea_2
zipp-3.23.0-pyhd8ed1ab_0
zlib-ng-2.2.4-h13dfb9a_0
Proceed ([y]/n)? y
Downloading and Extracting Packages:
Preparing transaction: done
Verifying transaction: done
Executing transaction: /
done
(sleap) WR34R6T7X1:~ polisev$ sleap-label
-bash: sleap-label: command not found
I have not found a solution, any additional help would be greatly appreciated!
Was finally able to resolve this, I have an M3 MAX mac:
conda create -n sleap_clean python=3.9 conda activate sleap_clean pip install sleap pip install PySide6
conda install -c conda-forge cattrs=22.2.0 conda install -c conda-forge matplotlib conda install -c conda-forge scikit-learn conda install -c conda-forge opencv conda install -c conda-forge psutil conda install -c conda-forge python-rapidjson conda install -c conda-forge qtpy
Because now numpy is out of compatibility you have to do conda install -c conda-forge "numpy<2" --force-reinstall conda install -c conda-forge sleap opencv conda install -c conda-forge jsmin conda install -c conda-forge albumentations conda install -c conda-forge jsonpickle conda install -c conda-forge pyzmq conda install -c conda-forge rich conda install -c conda-forge pykalman conda install -c conda-forge seaborn conda install -c conda-forge ndx-pose
Check what you have installed conda list | grep qt
You should only see qt6-main, pyside6, and related Qt6 packages. Clear Qt plugin cache (sometimes helps)
rm -rf ~/Library/Caches/QtProject
That worked for me
Hi everyone! I was also able to get SLEAP working on my M1 mac again. I uninstalled SLEAP using “conda env remove -n sleap”. Then, I reinstalled an older, stable version using “conda create -y -n sleap -c conda-forge -c anaconda -c sleap sleap=1.3.3".
Christina's solution also worked for me. Only downside is that we don't have the updates 1.4.1 has.
I did manage to find a workaround for installing 1.4.1 on my Macbook, by adding "qt<6" to the installation command, e.g.:
conda create -y -n sleap-env -c conda-forge -c anaconda -c sleap "qt<6" sleap=1.4.1
conda activate sleap-env
The solution was inspired by this issue.
^this worked for me as well. But I ran into an error at the Inference step. Seems to be an incompatability with 1.4.1 and new Mac chips.