Thomas Dorfer
Thomas Dorfer
Added the following Python libraries: - seaborn (for visualization) - dgl (deep graph library) for graph neural networks
- enable AAIndex1-based properties on top of hydrophobicity and hydrophilicity
Make it optional to choose the sum or mean of all amino acid properties in the sequence
Instead of taking the mean of amino acid properties over the whole sequence, do a sliding window approach to introduce some locality to stretches of amino acids in the sequence.
Transform amino acids into their evolutionarily similar states