Thomas Silvers

Set reference level in CPH using formula with Formulaic?

2

Hi, thanks for a useful package. Related to #458 and somewhat related to the discussion in #1203, is it possible to set a reference level for a categorical variable using...

Updates on `PECA` and related repositories

2

Hi there, I've been exploring a bunch of repositories that either contain the `PECA` software or have `PECA` as a major dependency. I've found these repos across a few accounts:...

Request for code clean-up and question about init. of "EM-like" approach

2

Hi, Thanks for the nice approach and follow ups [TimeReg](https://github.com/SUwonglab/TimeReg) and vPECA. 1. Gentle request for code clean-up: It would help open source development for some minor clean-up (var names,...

quick fix to avoid hitting a `packaging.version.InvalidVersion` error when installing with `setuptools>=66.0.0`, but note that "`setup.py install is deprecated. Use build and pip and other standards-based tools`" so a larger...

Hi, Thanks for writing this useful package. It looks like `FISTA` isn't respecting values passed to `tol`. I haven't checked other solvers or poked around much otherwise. See below to...

package incompatibilities

9

Hi, I'm running into package incompatibilities when running your setup. See below for environment script and error messages. Script (`dp.yml`): ``` name: dp channels: - conda-forge - bioconda - defaults...

availability of `regpolca`

1

Hi, Thanks for writing a useful package. I was searching the literature for work in SEMs with fusion penalties and encountered your paper on regularized LCMs ([Robitzsch 2020](https://doi.org/10.3390/jintelligence8030030)). I downloaded...

Custom meta-wrappers

3

**Is your feature request related to a problem? Please describe.** There is no documentation [here](https://snakemake.readthedocs.io/en/stable/snakefiles/modularization.html#meta-wrappers) or [here](https://snakemake-wrappers.readthedocs.io/en/stable/meta-wrappers.html) on custom meta-wrappers. From source, it appears meta-wrappers cannot be sourced in the...