Troy Anderson

Hi @ZHIDIHUAYUAN , did you manage to resolve this? I am receiving the same error.

In looking at the CellRanger peak calling, it looks like there is a peak called at the very end of chr23. Is it possible that the CallPeaks function might have...

So macs2 did in fact extend a peak at the end of the chromosome beyond the chromosome, and removing that single peak by taking the CallPeaks() output and setting that...

The optional parameter would definitely be helpful, since I'd think most users would likely have some sort of BSgenome or other genome attached to use as a reference for where...