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                                            szhaoaf

Latest version(s) requires Java 21, breaks compatibility on many systems

java 21 works for this bug. Install java 21, specify java 21 PATH, to run java -jar snpEff.jar solved this error.

`orderCells` function fails due to deprecated `nei()` call**

As the error said, ! nei() was deprecated in igraph 2.1.0 and is now defunct. The igraph version: 2.1.1 version accounts for the error. To solve this issue, simply downgrading...

`orderCells` function fails due to deprecated `nei()` call**

> In which package is `nei()` used? In that package, it can simply be replaced by `.nei()` which is the name of the function in igraph. Happy to make a...