Stefan Verhoeven

Results 83 issues of Stefan Verhoeven

On https://github.com/fair-software/badge#for-developers it says you can use ```shell # (from project root directory) docker build -t howfairis . ``` However this gives a error: ``` url: . AssertionError: url should...

You are about to submit a new Pull Request. Before continuing make sure you read the [contributing guidelines](CONTRIBUTING.md) and that you comply with the following criteria: - [x] You have...

**Describe the bug** On https://www.bonvinlab.org/haddock3/modules/topology/haddock.modules.topology.topoaa.html#mol1-hisd-1 the `mol1.hisd_1` parameter has explevel of expert while it is shown in the easy section. **To Reproduce** Steps to reproduce the behavior, if relevant, provide...

**Is your feature request related to a problem? Please describe.** Expandable parameters (aka parameters in defaults.yaml files with `_1` in their name) in the [workflow builder](https://github.com/i-VRESSE/workflow-builder) app are rendered as...

feature
yaml default parameters

The validator described at https://github.com/citation-file-format/schema and this tool require different "m versions of ruaml.yaml Python package. The versions have different APIs. You can't have both tools installed inside same environment.

For now you must use a git url to pip install. It would be nice I you could install it with `pip install doi2cff`.

The viewer now uses Dutch coordinate reference system, Dutch minimap layers and Dutch search. I would like to change `data/drivemap.json` file so I can use it for a different country

The examples now are simple code-block, to make sure they actually work they should be tested. See https://www.sphinx-doc.org/en/master/usage/extensions/doctest.html for syntax. The CI should run the tests with `cd readthedocs &&...

In https://github.blog/2021-04-22-github-actions-update-helping-maintainers-combat-bad-actors/ is explained that now first time contributors need approval before the workflows are run. Also see the [docs](https://docs.github.com/en/actions/managing-workflow-runs/approving-workflow-runs-from-public-forks). This mechanism also greatly reduces the threat of misuse of...

GitHub runner are still not advised to be run on public repositories. See https://github.com/ci-for-research/self-hosted-runners#security. A [Protected Workflows GH application](https://github.com/eladchen/protected-workflows) was made which can cancel unauthorized workflow runs. We should test...