clusTCR

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Hi! I was testing the pgen calculation after the recent updates allowing the selection of chains, and bumped into a bug related to python2 integer division within OLGA. It seems...

mrbarbitoff

No objects to concatenate in clustering.fit

3

Hi! After updating to the latest release of `clusTCR`, I am facing an issue while attempting to fit the clustering to data (please see the complete traceback below). The same...

mrbarbitoff

Examples in 'Clustering' raises different errors

1

It seems that clustering with any method other than `faiss` makes the clustering halt with the error `0-dimensional array given. Array must be at least two-dimensional` when using Python 3.11.4...

ustervbo

Retrieve the centroids

1

Hello ! Thanks for this amazing library. Is there a way to retrieve only the centroids for each cluster? Are they maybe the first sequence in each cluster (i.e. row...

Ch-rode

issue with metaclustering and airr data

4

Hello Sebastian and co. Thanks a lot for designing this nice package to understand the nature of TCR repertoire and potential expansions. My goal with the current airr data I...

guillemsanchezsanchez1996

Hi I want to use clustcr with distance metric of Levenshtein distance, according to the docs it should be like this ```python clustering = Clustering(distance_metric='levenshtein') ``` but when running and...

hananell

Error installing using conda

4

Trying to install from svalikiers channel using conda but running into below error. Any ideas? `conda install -c svalkiers clustcr` ``` Collecting package metadata (current_repodata.json): done Solving environment: failed with...

gregoryverghese

predicting new TCR peptide to existing cluster

1

Hi, After I make the cluster by the Clustering/fit function, is there anyway or convenience way to predict a new incoming TCR peptide sequence and assign a (existing) cluster number...

linuxbioinfoguy

MaxVanHoucke