Masato SUZUKI

I have a different question. In the Galaxy version we can modify settings of "Percent identity threshold for BLAST" and "Percent length overlap of BLAST hit for ResFinder database". How...

Sorry I figured out myself. --pid-threshold for Percent identity threshold for BLAST --percent-length-overlap-resfinder for ercent length overlap of BLAST hit for ResFinder database Another question. Can we use the --recursive...

@apetkau Thank you for your reply. >Do you mean recursively scan directories for input files? Yes. Good to have that option when we are dealing with a lot of input...

@apetkau Thank you for your kind help. I could recursively input fasta files in folders, but somehow the resulting output folder included only hits, but no others such as results.xlsx...

@apetkau Thank you for your reply. I use the latest version of staramr (v0.7.1) on Terminal.app of macOS Catalina v10.15.6. If there were within three fasta files, it was no...

@apetkau Thank you for your reply. I have found that if a fasta file that makes 'Predicted Phenotype' error is included for calculation, all the results were not output except...

> @apetkau Thank you for your reply. > I use the latest version of staramr (v0.7.1) on Terminal.app of macOS Catalina v10.15.6. If there were within three fasta files, it...

@apetkau Thank you for your reply. The 'Predicted Phenotype' error could be avoided after updating the pandas library. But, I faced other error as follows. `ERROR: Index length not within...

@apetkau Thank you for your reply. Using my MacBook Pro, I have converted fsa files in staramr/databases/data/update/plasmidfinder (just in case) and fasta files (for calculation) to Unix format by `dos2unix`,...

The fasta files (for calculation) were shown as "ASCII text" by `file`.