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                                            Shosuke Suzuki

feat: add AF-sample2 style random MSA masking (--mask_msa)

# AF-sample2 MSA Masking Congratulations on the Boltz-2 release — it’s a great milestone! Building on that success, this PR adds AF-sample2-style random MSA masking to help Boltz explore alternative...

Proposal: Unify randomness control for MSA subsampling and masking

I was looking at the existing MSA subsampling feature (`--subsample_msa`) and had an idea for a potential improvement. Currently, the subsampling is stochastic for each run, which makes experiments that...