suyeonwy issues

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                                            suyeonwy

comparing --call output bed files with gfa file

Hi, I'm working on generating pangenome using 19 genome assemblies with minigraph. After that, I generated a bed file for each used sample using the following command, and I got...

Multiple transcripts with the same coordinates

Hi, I'm trying to run StringTie for transcriptome assembly using BAM files generated by 'STAR' The command line that I used is followed ``` stringtie sample1.sorted.bam -f 0.1 -c 2.5...

Using Liftoff for gene annotation

Hi! I am working on gene annotation for the newly assembled genome of a new pig breed. I thought that the gene annotation of the pig reference genome could give...