Susheel Bhanu Busi

Hi, I'm running into the same issue and below is my command: ``` singularity run --home /scratch/users/sbusi/af2/alphafold/alphafold -B /scratch/users/sbusi/af2/alphafold/alphafold/data:/data -B .:/etc --pwd /scratch/users/sbusi/af2 --nv /scratch/users/sbusi/af2/af2-container/alphafold_2.2.3.sif run_alphafold.py \ --fasta_paths=${ALPHAFOLD_DATADIR}/h1.fa \ --output_dir=${ALPHAFOLD_DIR}/output_af2...

Has anyone found a fix or a workaround for this? Thanks!!

Great, that works. Thank you!

Hey @tayabsoomro. I'm interested in doing something similar, so could you please share this tool you're referring to? Thank you!

Hi, I'm getting a similar issue, but with longer protein sequences, i.e. 10,000 aminoacids or longer. ``` 2023-03-28 14:38:16,358 Could not get MSA/templates for LJNFGEOL_491293: MMseqs2 API is giving errors....

Hey @geronimp I'm having the same issue as the above two. The ```uniref100.dmnd``` database is missing from the databases folder where the installation occurred. Below is the error that I...

@ashley-isaac Thank you for this tip. I did the same, but wanted to verify that the ".KO" and the other were the same database or otherwise different. It'll be nice...

Hi.. thank you, but that minimal example did not work. I tried the following, and still get an error as such: ```Error in svd(X, nu = 0L) : a dimension...

Could you please provide a reproducible example? Thank you!

I'm in the same boat and it would be really nice to have that updated DB. Thank you though for your making the rest available in the first place!