oxdna-viewer
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sulcgroup
oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis
How to replicate: 1. Visit https://sulcgroup.github.io/oxdna-viewer/ on the latest version of Chrome. 2. Go to the Edit tab and create a 10 bp duplex. Zoom in so the duplex fills...
Toggling the orthographic camera causes some issues: - [ ] Box selection no longer works - [ ] Zoom no longer works - [ ] Can mess up render order...
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Includes link to github, documentation, examples, video tutorials, research papers, and a changelog based on the commit history. 
Hi, I used [`tacoxDNA/src/cadnano_oxDNA.py`](https://github.com/lorenzo-rovigatti/tacoxDNA/blob/master/src/cadnano_oxDNA.py) [`7_icosahedron.json`](https://github.com/sulcgroup/oxdna-viewer/blob/master/examples/icosahedron/7_icosahedron.json) ` he -o` to generate a `7_icosahedron.json.oxview` file (attached below). Drag and drop it into oxview, and then `Dynamics -> Forces -> Create from base...
If you use `api.toggleBaseColors()` and then select and deselect a nucleotide, its color reverts to the usual color scheme rather than grey. Presumably this is because we wrote the update...
If the .dat and .top files are missmatched, the correct error is thrown, but the page must be refreshed before files can be dropped again. This should clear the variables...
The extendStrand method in the RNA model calculates the helix axis and generates an RNA helix starting from a nucleotide. Previously, the calculation of the helix axis had a minor...
Affects: tacox plugin: Cadnano design files with multiple scaffold strands, double stranded sections that use the scaffold Problem: * It is only possible to select a single scaffold sequence. *...
Notify when getElement with a out of range index is called. Usefull to easily find eg. typos in scripts with lots of element indecies.
