sukyorsuki

I have a model trained on ref_data with cell type labels vae = sca.models.SCANVI( ref_data, "Unknown", n_layers=2, encode_covariates=True, deeply_inject_covariates=False, use_layer_norm="both", use_batch_norm="none" # use_cuda=True ) vae.train( max_epochs= 400, use_gpu= False )...

Error in depicting differential genesets while using irGSEA.bubble, irGSEA.bubble,irGSEA.barplot

2

irGSEA.heatmap.plot

Zero output in Tutorial1 example2

1

Thanks for sharing the great tool! I successfully run these codes in tutorial1.ipynb, but the mouse_flux.csv turned out to be zero since row 27. The only change in the src/scFEA.py...