Sebastian Uhrig

This explains the high duplication rate. Does your library have unique molecular barcodes (UMIs)? Arriba performs duplicate making solely based on the mapping coordinates. If you have UMIs, then duplicate...

Do you have any further questions or can I close this issue?

Glad to hear! I'm closing this issue, then. If you run into any other problems, feel free to reach out to me again.

Hi @maxulysse, can I help you with the additional checks? All I can say is I have run this several times now without any issues. Regards, Sebastian

Hi Yuyao, The prebuilt containers are not compatible with hg38, unfortunately. Regards, Sebastian

There is a `hg38` branch in this repository. I think @NagaComBio is more qualified than me to answer what the status of this branch is and whether it is usable.

Can you send me the content of the file you passed as an argument to `--cytobandsFile` as well as the first fusion of the fusions file? Which version of Arriba...

Can you send me the first fusion of the fusions file (AGAP3:BRAF)?

I cannot reproduce the error. Which GTF file did you use to run Arriba and which one did you use to run `draw_fusions.R`?

In the beginning you wrote that you used `cytobands_hg19_hs37d5_GRCh37_v2.4.0.tsv` for the cytobands file. Now you write that you used `cytobands_mm10_GRCm38_v2.4.0.tsv`. What did you actually do? Regardless, both are wrong. The...