fetchngs
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Update module sratools prefetch
This PR fixes #285. Downloads using sratools often resulted in corrupt files, because the tool to check the file integrity, vdb-validate
is not always reliable. This PR updates the module sratools/prefetch
, which includes a fix which performs a manual MD5 sum check in cases where vdb-validate
is unreliable.
PR checklist
- [X] This comment contains a description of changes (with reason).
- [ ] If you've fixed a bug or added code that should be tested, add tests!
- [X] Make sure your code lints (
nf-core lint
). - [X] Ensure the test suite passes (
nextflow run . -profile test,docker --outdir <OUTDIR>
). - [X] Check for unexpected warnings in debug mode (
nextflow run . -profile debug,test,docker --outdir <OUTDIR>
). - [X]
CHANGELOG.md
is updated.