Gregory Stupp
Gregory Stupp
I'm having an issue running the example from "Understanding empirical Bayesian hierarchical modeling (using baseball statistics)" http://varianceexplained.org/r/hierarchical_bayes_baseball/ I run everything before and up to: ``` crossing(bats = c("L", "R"), AB...
Is there a way (preferably on the command line) to add a prefix definition to an ontology? To give my specific usage, I am trying to merge some triples into...
Please check the image on this page, the image is missing. Thanks https://github.com/owlcollab/owltools/wiki/Map2Slim
I think it would be useful for mygene to also store information about proteins with no associated Entrez record. For example: http://www.uniprot.org/uniprot/A2NXD2 http://www.uniprot.org/uniprot/Q5NV61
The mygene response for https://mygene.info/v3/gene/26774 is missing the genomic_pos field, even though the data exists here: https://www.ncbi.nlm.nih.gov/gene?cmd=retrieve&dopt=default&list_uids=26774 Is this right? Thanks!
There should to be a way to determine where exactly each field within each document comes from. This is necessary to be able to accurately use the data. This can...
Since the genes are indexed by the Entrez ID, it would be helpful in certain cases to retrieve the Entrez genomic position (as well as the ensembl genomic position) especially...
Load rxnorm. scrape API, example: https://rxnav.nlm.nih.gov/REST/rxcui/595060/allProperties.xml?prop=all
CAS is missing from [SDF file](ftp://ftp.ebi.ac.uk/pub/databases/chebi/SDF/) but is present (along with many other xrefs) in the obo/owl files: ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi.obo.gz ``` [Term] id: CHEBI:15578 name: (25S)-5beta-spirostan-3beta-ol alt_id: CHEBI:178 alt_id: CHEBI:10854 alt_id:...
See: https://www.ebi.ac.uk/chembldb/index.php/compound/inspect/CHEMBL1431 http://mychem.info/v1/chem/XZWYZXLIPXDOLR-UHFFFAOYSA-N?fields=chembl