ROSE

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How to build a new genome?

1

Hello! I want to use this tool to analysis the super enhancer in the plant tissue, but it needs to input a reference genome following the -g parameter. The problem...

hcph

Can I use this tool for plants?

3

Hi, Thank you for your interesting tool. I work on plants, so can I use it for plants? Best, Han

hanshanmengqi

An error about module

2

I have an error: Traceback (most recent call last): File "ROSE_main.py", line 16, in import ROSE_utils ModuleNotFoundError: No module named 'ROSE_utils' I want to know how to solve. Thanks!

anxuan-web

Hi, Everyone. I encountered this problem when running ROSE, Does anyone know how to solve it? Thanks very much for your help. python2.7) liurui@dhcp651-233 rose % python ROSE_main.py -g /Users/liurui/ROSE/hg19...

taolin1988

ValueError: invalid literal for int() with base 10: '1e+05'

3

Hello, I had this error after running a long time on 16 core cpu, 384gb ram and python 3.6. How can I solve this? ROSE version is 1.3.1 ``` Warning...

alirizaaribas-ibg

Dear developer, Thanks for your work in ROSE! I am wondering what is the difference between ROSE and ROSE2. It seems that two of them are quite similar (similar scripts...

XiaoyuZhan520

Now I have two sets of data, one is the dosed experimental group and the other is the undosed group. I want to find the super enhancer of the difference...

lanpangzi111

the results i got from ROSE is as follows:  what confused me is that all the results' name have "Stitched", not 'Enhancers'? Did i wrong ??

ytxwz1989

This repository provides a Docker image, but not the accompanying `Dockerfile`. Can you add it?

adthrasher

Why am I getting a rough/unsmooth hockey stick plot?

1


acheng314159