ROSE IndexError: list index out of range

[taolin1988]

Hi, Everyone.

I encountered this problem when running ROSE, Does anyone know how to solve it? Thanks very much for your help.

python2.7) liurui@dhcp651-233 rose % python ROSE_main.py -g /Users/liurui/ROSE/hg19 -i /Users/liurui/ROSE/HG18_MM1S_MED1.gff -r /Users/liurui/ROSE/MM1S_MED1.hg18. bwt.sorted.bam -o /Users/liurui/ROSE -s 12500 -t 2000 folder /Users/liurui/ROSE/mappedGFF/ does not exist USING /Users/liurui/ROSE/HG18_MM1S_MED1.gff AS THE INPUT GFF USING /Users/liurui/ROSE/hg19 AS THE GENOME MAKING START DICT Traceback (most recent call last): File "ROSE_main.py", line 484, in main() File "ROSE_main.py", line 336, in main startDict = ROSE_utils.makeStartDict(annotFile) File "/Users/liurui/ROSE/ROSE_utils.py", line 168, in makeStartDict refseqTable,refseqDict = importRefseq(annotFile) File "/Users/liurui/ROSE/ROSE_utils.py", line 230, in importRefseq if refseqDict.has_key(line[1]): IndexError: list index out of range