John Sterrett

icon indicating a website link sterrettjd.github.io/

icon location Boulder, CO icon location CU Boulder Physiology & Quantitative Biology PhD Candidate | Lozupone and Lowry labs | Studying microbes and stress with multi-omics

Results 3 issues of John Sterrett

Nonpareil exiting after "Evaluating consistency"

Hi Nonpareil team, Thanks for the cool tool! I've been trying to use it on my data, but it seems like the program is exiting at the "evaluating consistency" step....

panphlan_clean_pangenome.py isn't installed as part of the package

Hi PanPhlAn team, I was going to use `panphlan_clean_pangenome.py` with to clean a pangenome that I downloaded with PanPhlAn v3.1 and am using for mapping. However, through the conda installed...

KEGG API timeouts

Documenting email conversation with @acolorado1 in case others run into this Sofia: > Currently trying to run 3 pairwise comparisons with AMON (e.g., 3 files total and AMON takes 2...