stephrom

Dear, I'm trying to run megalodon but I'm stuck when remora models need to be read. my cmd line is: megalodon --overwrite \ --outputs basecalls mappings mod_mappings per_read_mods mods \...

most likely due to a circular import

5

Dear, I systematically get the following error: ImportError: cannot import name 'dedup_cython' from partially initialized module 'pairtools.lib' (most likely due to a circular import) (/shared/clssoft/apps/x86_64/pairtools/1.0.3/lib/python3.8/site-pack could one advice, please Best...

installing medaka (with pip) on M1

1

> Medaka is a Research Release. > > Research releases are provided as technology demonstrators to provide early > access to features or stimulate Community development of tools. Support for...

# Please fill out the issue checklist below, and provide all of the requested information. # Please always follow these steps: - [ x] Confirmed this is a problem with...

memory (RAM) usage for dorado correct

5

# Issue Report ## Please describe the issue: I try to use dorado correct, but never get any success due to RAM shortage. The process starts and delivered with the...