CuratedAtlasQueryR
CuratedAtlasQueryR copied to clipboard
take intersection of genes in the `get_single_cell_experiment` function
@myushen This is in reference to
https://teams.microsoft.com/l/message/19:130d71a5-dc95-495c-b678-77fe3c8131c5_2c56e6fb-516c-470d-8000-2e655cd72bbc@unq.gbl.spaces/1710302042265?context=%7B%22contextType%22%3A%22chat%22%7D
The solution is to
Change the get_SCE
function, but NOT the import
function.
Commit 1:
- Create a function that takes a list of SCE and tests (+ warning warning("CuratedAtlasQuery says ....") ) is the genes do not completely overlap
- Build the unit test for it
Commit 2:
- Create a function that takes a list of SCE, run the test (commit 1), select just overlapping genes and cbind those
- Build the unit test for it
Commit 3:
- Use the function of commit 2 in the API.