Stanislaw Dunin-Horkawicz

icon indicating a website link https://ibe.biol.uw.edu.pl/en/835-2/research-groups/laboratory-of-structural-bioinformatics/ icon indicating an email [email protected]

icon company IBE UW icon location Tübingen & Warsaw icon location Max Planck Institute for Biology Tübingen and University of Warsaw. Interested in applying computational tools to study protein evolution and function.

Results 3 issues of Stanislaw Dunin-Horkawicz

Truncated alignments from self comparison

Regardless of the parameters used, aligning a sequence to itself yields the best scoring alignment with a score slightly

bug

Multi-GPU support in embeddings.py

3 comment

``` python embeddings.py start data_set_fullseq.fasta data_set_fullseq -embedder pt --gpu -bs 0 ``` When run as above, everything works fine. However, if I use the `-nproc 2` flag, the computations are...

bug

Re-implement graphical display of database search results

3 comment

Rewrite [https://github.com/labstructbioinf/pLM-BLAST/blob/main/scripts/plot.py](url) and integrate with the current version.

bug