bayesplot
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stan-dev
bayesplot R package for plotting Bayesian models
Hello there! For educational purposes, I experimented a bit with different model formulations, with and without centering in brms. For that, I formulated priors and wanted to get prior draws...
The only plot type supporting censored data currently is `ppc_km_overlay` (plus `_grouped`), which plots overlaid Kaplan-Meier plots, which is an excellent idea. Other plots can be useful, too, and we...
At the moment, these functions use `geom_density`, or `stat_density` - ppc_dens - ppc_dens_overlay - ppc_dens_overlay_grouped - ppd_dens - ppd_dens_overlay - mcmc_dens - mcmc_dens_overlay - mcmc_dens_chains - mcmc_areas - mcmc_areas_ridges They...
@n-kall asked me to create an issue concerning the default PPC plot for categorical outcomes, which is less than ideal. Maybe it would be nice to be able to generate...
The release candidate for ggplot2 available via `remotes::install_github("tidyverse/ggplot2", ref = remotes::github_pull("5592"))` breaks some of the visual tests due to very tiny differences in the SVGs. Once ggplot2 is released (scheduled...
Error occurs with example code from https://mc-stan.org/bayesplot/. > fit posterior > plot_title "with medians and 80% intervals") > mcmc_areas(posterior, > pars = c("cyl", "drat", "am", "wt"), > prob = 0.8)...
Hi, I get the below error when installing the latest version of bayesplot: ``` trying URL 'https://cloud.r-project.org/src/contrib/bayesplot_1.10.0.tar.gz' Content type 'application/x-gzip' length 4993447 bytes (4.8 MB) ================================================== downloaded 4.8 MB *...
I can create pairs plots fine on my laptop. ```{r} mcmc_pairs(mcmc_out$draws(), np = nuts_params(mcmc_out)) ``` When I run the identical code on the [Sharcnet](https://www.sharcnet.ca/my/systems/show/114) HPC system, if I include `np...
bayesplot is still offering metrics like rhat that now reside in the posterior package. Not do both packages implement them, the implementations differ (afaik posterior is the up-to-date one while...
*Summary* It would be great if `ppc_km_overlay()` could accomodate left-truncation when computing the Kaplan-Meier functions for the original sample and for the simulated data from the PPD, and not only...
