Stian Soiland-Reyes

icon indicating a website link https://s11.no/ icon indicating an email [email protected]

icon company eScience lab, The University of Manchester icon location Manchester, UK icon location Senior Lecturer with interests in Linked Data, RESTful web services, provenance, annotations, open science, reproducible research

Results 262 comments of Stian Soiland-Reyes

Add new command `nf-core rocrate` to create a Research Object (RO) crate for a pipeline

For the structure of the workflow and nested workflows, see https://gitlab.liris.cnrs.fr/sharefair/bioflow-insight which can parse the DSL2 definitions and generate an RO-Crate.

Entry Points for RO-Crate Profiles

agreed in steering committee 2025-09-04: - Profile conformance can be applied at any level of the RO-Crate, not just at root. - RO-Crate 1.2 implementation note to highlight how a...

Release RO-Crate 1.2

Remaining issues on milestone: - #300 - #297 (@dgarijo)

Release RO-Crate 1.2

Updated procedure here (not in `md`) to add milestone housekeeping and checking latest issues are also on the milestone.

Release RO-Crate 1.2

I think for the 1.2 context and profile crate, we don't need to make `docs/_compatibility/1.2` copies, as https://github.com/perma-id/w3id.org/blob/master/ro/crate/.htaccess already has been fixed to redirect to the `specification/` subdirectory.

Release RO-Crate 1.2

Reserved DOI for 1.2.0 is `10.5281/zenodo.13751027`

Release RO-Crate 1.2

#362 should be clarifide before we release.

Release RO-Crate 1.2

Blocked on #381 #380 #379 May also merge #384 after resolving its merge conflict.

Release RO-Crate 1.2

--> Prepare release candidate for 2025-03-13 for vote

Release RO-Crate 1.2

* Release candidate 1.2.0 RC1: https://github.com/ResearchObject/ro-crate/releases/tag/1.2.0-RC1 * Steering commitee vote: https://github.com/ResearchObject/governance/issues/14 * Discussion on RC1: https://github.com/ResearchObject/governance/discussions/13