Seth

I'm not currently planning on adding it, only due to personal time limitations. I do want to leave this open tough because it _would_ be great to have.

Hi! Sorry for the delay in reply, I'm not sure how I missed the notifications. You are correct that -F 260 will exclude any unmapped or reads that are not...

Hi! I appreciate the ask about citations! Nobody has asked about that before. I've added a Citation file and there should now be a `Cite the repository` button on the...

Nope, you aren't missing anything! That is how it does it and it for sure slows things down. I do like the idea in your PR if the functions from...

Closing along with https://github.com/sstadick/gzp/issues/37 Still could be nice to move off this, but I know have more of a relationship with the core_affinity author who did get things done when...

I've asked 👍

I believe it was resolved, I'll get another round our dependency updates in today at some point.

Link added in the README! Thanks for the call out 👍 An issue to keep half an eye is this one: https://github.com/sstadick/gzp/issues/44 zune should be able to replace libdeflate, and...

Hello! Could you clarify which commands you used? I'm assuming based on ouput format that the first is is `only-depth` and the second is `base-depth`. Could you also share a...

No worries! Yes, the `-m` and `-F` options, try running with without / with differing combos of those which should hopefully narrow down the source of difference.