Srivathsa Pasumarthi

Adding to @doc78 's point, I think clipping the input off negative values and scaling it between 0 and 1 helped me in solving the 0 dice score problem. However...

Any updates on this feature?

I have a follow up question: The pretrained weights `vxm_dense_brain_T1_3D_mse.h5` - is this the model weights trained using 3000+ 3D T1W brain MRI images as described in [this paper](https://arxiv.org/pdf/1809.05231.pdf)?

I faced the same issue. It seems the latest version of neurite has not been published to pypi yet. I did ``` $ git clone https://github.com/adalca/neurite ``` and then ran...

@amirmmi On a side note, I was able to use [IXI](https://brain-development.org/ixi-dataset/) and [ADNI](http://adni.loni.usc.edu/) datasets successfully.

@StefanDenn3r To make it work with IXI and ADNI, my changes were mostly in `dataloaders/BRAINWEB.py` itself. But yeah, sure I can create a PR soon.

Yes, I have the same question. Can you please tell how you are doing histogram matching?