Scott Ritchie

Add support for plink2 binary format dosage data (pgen)

3

E.g. via a `snp_readPgen()` function analogous to `snp_readBed()`. The plink2 binary format (https://www.cog-genomics.org/plink/2.0/input#pgen) has several advantages over the plink1 binary format (bed/bim/fam): - Data are stored as probabilistic dosages, rather...

In addition to the results provided in `notebooks/results/*.tsv`, it would be useful if there was an additional column providing a link/doi/title/citation for the paper in which the GWAS hit was...

Error from concordancefit with strata term when nvar > 1

1

The concordance function currently cannot be used to compare models when also using a strata term. Reproducible example using the mgus2 data based on the example code for the concordance...